MELO3C034398 (gene) Melon (DHL92) v4

Overview
NameMELO3C034398
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr10: 14882032 .. 14884229 (-)
RNA-Seq ExpressionMELO3C034398
SyntenyMELO3C034398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCTCACTTGTGCCGTGTTCACCATCCATCAGTCCGCGTTCACCGCCGTGTTCCACCTCTCAAAAAATGCGTACCAAATCCTTCCCATTTCATTCGTTCGTCCGACTCTCTCCCTGCCACCGCCCTCTCCGATTCTCTCTCTGCCTCCGTCTTCGACTCTTTCCCTGTTGCCATGTCTCCATCTCTCTCGCCTTCCTCTCAATCTACATTTTGTTACATTCTTGTTCTTCTCCTTAGGGCTTTCATTTCTCCATGTTTCAATCGATTAGTTTGTAATTTTCCTTCAATTTTTTTGTTCTTAATATGATTTCCACCTCAATTTTTCTAGGGCTTTTAATTGTAGCTTGTGATGTGTCACATTCCAACCTAAAGGGTTCTTCTTCCTCGTTTGTTCAAAGAATTCAACTTGTTCTTCTTACTTCTTAGTTATCTACTGGTGTAAGTATTTTTTGCTTCTTTTTTTATTGAATCTTTGAGTTTCTACATTTTGGGAATTGAAAATTTTCTTTGTTCTGTTTCTTTCTTTATTGAAATCTTTTTTAATTTTCTTTTTCTTTCTTTGACATTATTTCTTATGTAAATGTAATCTTACTTTTTGTTTATTTGTTAATTTCATTTGTAAATGTCTTATACTCTTCTTGCCTTCTCCTCTTTGGTTTTTAAATGCCTTACCTTGGCTACTCTCATTTGGTTTTTGTTCTAGTTTTGTTCTCCATCCCTGTTTGTTTCCATGTGTGTTGTCTGTCGCACCTCTTTAATTTGTGATAATTGGAACTTTTTTTGTTCTTGCTTCTTTGTTGGCTGGATGCTTAGAGTCAAAGACTTGGTTGTGAGGATTATTTGAAAACGTGTTCGGATAATGACATTTATGTCTTGGCCTGGCGAGATTTGAAATTCACATTTTTCTATCCTCATGTATTTCAATTTGGGCAAGCTTAGTATTCTATGTGAAAATGTCTCCATTTCACATTATCCAACTGTATACAATATCTCCAACGATGGAAACTTAATCGTACATTTTCCATTGTGAAGGCAAGCTAGTCTTGGTAAGGCATATATTTCGATTTCTTCCATGTTTTTGAAAACAATTTCACCATTTCTTCTTCTCCTTCTTCGGGTGTAACTGTAAATCTCATTTCTCTTAAGCTTGATATTTTGCACCATATATAAAGTTGTTCTCAATTCTCAATGTTCAATCACTAAAGTTAACCAAATTGCACAGGTGTTTGTTTAGTATCCAACATTTCACTTGGCATTTGATGAAGGTTTCACGTTTTCTTGTTAATGATACATGCCCTTTTTCTAATTCAGCTTCGGATTATTATACACACCATCAAAATATTTAGTTTAAAAACATTTGATTACTCATCAGTTTTAGTGTGGTTGCATGTTTGAAGTTCATAAAAGTAATGGTAATTTTGGCAGATCATAACTGAGGAGATGGACCTAATAGCTGAGACATACATTGCTGCTCATTATTGTGGTACAAGTCAGCCCAGTTAGAAACTCTATGCCTAATTATAGAAGTTCAAGAGGGAAAGTCGTCTATCTCAGTGATGCAAATATGCACTCAGGGTATTTGTTTACCTTTTCTAATACTCAGGGTATTTGTTTACCTTTTCTGATATTAGACATTTTGATGTGTTAAGATATTTTTAGGAACTAGTCTAGATTTGATAATTATGACATGATAGGCATTATCTTTATAGCCTCCTTTTGTATTCTTTTATTTATTTTCTATGAATCTTTGGTTTGTATGCATAAATTACAATTATGGATTATTTGATTTCTTTTGGTCCTTCTAACCTTTTGAATGCAAGTTAAATGTTGCGTGAAATGTTGCTGTAAAATGTGCTACAATCACCCCAGGTTTGTCATTTGTATCCATTTTATTCTCATATTGTACAATCACCAAATGATGGACATAATTATCAGCTTTAACAATTTAATTGATATCTCTTAATCTCTCTCATTTTTCAGATGAGGCCAGGGTCAAACAGTTTGGACTTAAAACTTGGAGAAGTCCCAATGGCACAATTAAGGAATAGACGCATTCTCATTTATTGATTTCGACAACTGTTTTTTCATCCCCAAACCTTTTATTTTCTATCATTACTTTTTATTTCTATTCAGTTCCAGAAAATGGGGAGACATGAAGAGAGCTTGAGGTTTAAGACTTCAAAGGATCAGGCATAG

mRNA sequence

ATCCCTCACTTGTGCCGTGTTCACCATCCATCAGTCCGCGTTCACCGCCGTGTTCCACCTCTCAAAAAATGCGTACCAAATCCTTCCCATTTCATTCGTTCGTCCGACTCTCTCCCTGCCACCGCCCTCTCCGATTCTCTCTCTGCCTCCGTCTTCGACTCTTTCCCTGTTGCCATGTCTCCATCTCTCTCGCCTTCCTCTCAATCTACATTTTGTTACATTCTTGTTCTTCTCCTTAGGGCTTTCATTTCTCCATGTTTCAATCGATTAATCATAACTGAGGAGATGGACCTAATAGCTGAGACATACATTGCTGCTCATTATTGTGGTACAAGTCAGCCCATTCTATTCAGTTCCAGAAAATGGGGAGACATGAAGAGAGCTTGAGGTTTAAGACTTCAAAGGATCAGGCATAG

Coding sequence (CDS)

ATCCCTCACTTGTGCCGTGTTCACCATCCATCAGTCCGCGTTCACCGCCGTGTTCCACCTCTCAAAAAATGCGTACCAAATCCTTCCCATTTCATTCGTTCGTCCGACTCTCTCCCTGCCACCGCCCTCTCCGATTCTCTCTCTGCCTCCGTCTTCGACTCTTTCCCTGTTGCCATGTCTCCATCTCTCTCGCCTTCCTCTCAATCTACATTTTGTTACATTCTTGTTCTTCTCCTTAGGGCTTTCATTTCTCCATGTTTCAATCGATTAATCATAACTGAGGAGATGGACCTAATAGCTGAGACATACATTGCTGCTCATTATTGTGGTACAAGTCAGCCCATTCTATTCAGTTCCAGAAAATGGGGAGACATGAAGAGAGCTTGA

Protein sequence

IPHLCRVHHPSVRVHRRVPPLKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMSPSLSPSSQSTFCYILVLLLRAFISPCFNRLIITEEMDLIAETYIAAHYCGTSQPILFSSRKWGDMKRA
Homology
[Close]
BLAST of MELO3C034398 vs. NCBI nr
Match: KAA0047028.1 (uncharacterized protein E6C27_scaffold829G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1  IPHLCRVHHPSVRVHRRVPPLKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMS 60
          IPHLCRVHHPSVRVH RVPP +KCVP+PSHF+R SDSLP         AS+FDS P ++S
Sbjct: 14 IPHLCRVHHPSVRVHPRVPPCQKCVPDPSHFVRPSDSLP---------ASIFDSLPTSLS 73

Query: 61 PSLSPSSQSTFCYILVLLLRAFISP 86
          PSLSPSSQSTFCYILVLLLRAFISP
Sbjct: 74 PSLSPSSQSTFCYILVLLLRAFISP 89

[Close]
BLAST of MELO3C034398 vs. NCBI nr
Match: TYK13521.1 (uncharacterized protein E5676_scaffold1015G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-26
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1  IPHLCRVHHPSVRVHRRVPPLKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMS 60
          IPHLCRVHHPSVRVH RVPP +KCVP+PSHF+R SDSLP         AS+FDS P ++S
Sbjct: 14 IPHLCRVHHPSVRVHPRVPPRQKCVPDPSHFVRLSDSLP---------ASIFDSLPTSLS 73

Query: 61 PSLSPSSQSTFCYILVLLLRAFISP 86
          PSLSPSSQSTFCYILVLLLRAFISP
Sbjct: 74 PSLSPSSQSTFCYILVLLLRAFISP 89

[Close]
BLAST of MELO3C034398 vs. NCBI nr
Match: XP_016900105.1 (PREDICTED: uncharacterized protein LOC107990315 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0 

Query: 21  LKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMSPSLSPSSQSTFCY--ILVLL 80
           L+K VP+PSHF+  SD LPATALSDSLSA+VFDS PV +SPSLSP SQSTFCY  +LVLL
Sbjct: 33  LQKRVPDPSHFVCLSDFLPATALSDSLSATVFDSLPVTLSPSLSPFSQSTFCYVLVLVLL 92

Query: 81  LRAFISPCF 88
           LRAFISP F
Sbjct: 93  LRAFISPGF 101

[Close]
BLAST of MELO3C034398 vs. NCBI nr
Match: KAA0040696.1 (putative lysine-specific demethylase JMJD5 isoform X3 [Cucumis melo var. makuwa] >TYK07889.1 putative lysine-specific demethylase JMJD5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-06
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 46  SLSASVFDSFPVAMSPSLSPSSQSTFCYILVLLLRAFISP 86
           S + +VFDS P A+SPSLSPSSQ TFCYILVLLLRAFISP
Sbjct: 65  SPATAVFDSLPAALSPSLSPSSQFTFCYILVLLLRAFISP 104

[Close]
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match: A0A5A7TVW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00110 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1  IPHLCRVHHPSVRVHRRVPPLKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMS 60
          IPHLCRVHHPSVRVH RVPP +KCVP+PSHF+R SDSLP         AS+FDS P ++S
Sbjct: 14 IPHLCRVHHPSVRVHPRVPPCQKCVPDPSHFVRPSDSLP---------ASIFDSLPTSLS 73

Query: 61 PSLSPSSQSTFCYILVLLLRAFISP 86
          PSLSPSSQSTFCYILVLLLRAFISP
Sbjct: 74 PSLSPSSQSTFCYILVLLLRAFISP 89

[Close]
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match: A0A5D3CNX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1015G00020 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1  IPHLCRVHHPSVRVHRRVPPLKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMS 60
          IPHLCRVHHPSVRVH RVPP +KCVP+PSHF+R SDSLP         AS+FDS P ++S
Sbjct: 14 IPHLCRVHHPSVRVHPRVPPRQKCVPDPSHFVRLSDSLP---------ASIFDSLPTSLS 73

Query: 61 PSLSPSSQSTFCYILVLLLRAFISP 86
          PSLSPSSQSTFCYILVLLLRAFISP
Sbjct: 74 PSLSPSSQSTFCYILVLLLRAFISP 89

[Close]
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match: A0A1S4DWL6 (uncharacterized protein LOC107990315 OS=Cucumis melo OX=3656 GN=LOC107990315 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.0e-16
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0 

Query: 21  LKKCVPNPSHFIRSSDSLPATALSDSLSASVFDSFPVAMSPSLSPSSQSTFCY--ILVLL 80
           L+K VP+PSHF+  SD LPATALSDSLSA+VFDS PV +SPSLSP SQSTFCY  +LVLL
Sbjct: 33  LQKRVPDPSHFVCLSDFLPATALSDSLSATVFDSLPVTLSPSLSPFSQSTFCYVLVLVLL 92

Query: 81  LRAFISPCF 88
           LRAFISP F
Sbjct: 93  LRAFISPGF 101

[Close]
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match: A0A5D3CC47 (Putative lysine-specific demethylase JMJD5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4249G00010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 46  SLSASVFDSFPVAMSPSLSPSSQSTFCYILVLLLRAFISP 86
           S + +VFDS P A+SPSLSPSSQ TFCYILVLLLRAFISP
Sbjct: 65  SPATAVFDSLPAALSPSLSPSSQFTFCYILVLLLRAFISP 104

The following BLAST results are available for this feature:
BLAST of MELO3C034398 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047028.14.9e-2676.47uncharacterized protein E6C27_scaffold829G00110 [Cucumis melo var. makuwa][more]
TYK13521.18.3e-2676.47uncharacterized protein E5676_scaffold1015G00020 [Cucumis melo var. makuwa][more]
XP_016900105.11.0e-1576.81PREDICTED: uncharacterized protein LOC107990315 [Cucumis melo][more]
KAA0040696.19.6e-0680.00putative lysine-specific demethylase JMJD5 isoform X3 [Cucumis melo var. makuwa]... [more]
BLAST of MELO3C034398 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVW72.4e-2676.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CNX24.0e-2676.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DWL65.0e-1676.81uncharacterized protein LOC107990315 OS=Cucumis melo OX=3656 GN=LOC107990315 PE=... [more]
A0A5D3CC474.6e-0680.00Putative lysine-specific demethylase JMJD5 isoform X3 OS=Cucumis melo var. makuw... [more]
BLAST of MELO3C034398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034398.1MELO3C034398.1mRNA