MELO3C034322 (gene) Melon (DHL92) v4

Overview
NameMELO3C034322
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr10: 8196113 .. 8197269 (+)
RNA-Seq ExpressionMELO3C034322
SyntenyMELO3C034322
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTCAGGAATACCATTATTCCCGACGCCATTTTGGGGATTTCCCAACGCCGCAGGACTGCGTCAAAAAATCCCCTATATAAACGTTTCAGTTATGTTATTCACAGAACTGAAATCGAAAGGGAAAGGGAGAAGAGAGAAACGTTGAGTCTTCGCCGTCCGTAGCTCGCCGCCGTCCGTTCCATCGTCATTGTCGTCCCTCGCCTTAACGCCACCGTCTGCCACCTTAGGTAAGTTTGAAATTTTTGTAGGGGGTTATGGTTGCATTCAAATTTGAATGGGGAGTTTATGTTTTGAATTGAAAATGTAATATGTGTGTTAAGATTTGTTTTGACTATCCTGCAGTTATGGTAGCTTGTTTGTGTTGAATATTTTTATTGTTGATTTGAAATGACTATCCTGCAATTATGGTAGACTTTTTTGTTTTGAATTTGTTTCTGTTTGGGATGGCTATCCTGCAGTTATGGTAGTTTTTTTTGTTTTGAATTTGCTTCTGTTTGGGATGGTTTCAAGGGGTAGTAGTATGACGAATTATAGTGACAAACCACGTACCCACATATTTATGTAGTTTATATATTTTGATTCTAGCTTTGTGTTCGTATTTGCTTATTGAATGTTTGTTTTCTATGTCCACAACTATTATGCCATCGACATATCCATGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTAAGATAACATTGCGGGAGGGTCTTCTTCTGTGGAGTTGTTCCGGGAAGCACACGTTCGAGCTGGGATGTTCGTGTTGCAGGCCGCAGAGGATGCGCATGTAAGTTATGCCCTTATTAATTATCCCCTTTCATTATATATTTTTGCGCGTTAGCTAACATAGTTTTTAAATTTGTTGTAGAATCAAATGCTGGAACTCCAATCTCAGCCTACCCAGAGGGTAGTCAGCCACTCTCTAAGGATGAGATATGCGATCAGGTGTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGAGGACCCAAGCCAAAGGCCCGCAGGACGACGAGTGCGAGCAGTTTGTCGACATCTTGTTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATAAAGTTTTGGAACAAATTGAAGTGCAAGATAGAAATCACCAAGCGTTAG

mRNA sequence

ATGAGCTTCAGGAATACCATTATTCCCGACGCCATTTTGGGGATTTCCCAACGCCGCAGGACTGCGTCAAAAAATCCCCTATATAAACGTTTCAGTTATGTTATTCACAGAACTGAAATCGAAAGGGAAAGGGAGAAGAGAGAAACGTTGAGTCTTCGCCGTCCGTAGCTCGCCGCCGTCCGTTCCATCGTCATTGTCGTCCCTCGCCTTAACGCCACCGTCTGCCACCTTAGATAACATTGCGGGAGGGTCTTCTTCTGTGGAGTTGTTCCGGGAAGCACACGTTCGAGCTGGGATGTTCGTGTTGCAGGCCGCAGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCAGAGGGTAGTCAGCCACTCTCTAAGGATGAGATATGCGATCAGGTGTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGAGGACCCAAGCCAAAGGCCCGCAGGACGACGAGTGCGAGCAGTTTGTCGACATCTTGTTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATAAAGTTTTGGAACAAATTGAAGTGCAAGATAGAAATCACCAAGCGTTAG

Coding sequence (CDS)

ATGTTCGTGTTGCAGGCCGCAGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCAGAGGGTAGTCAGCCACTCTCTAAGGATGAGATATGCGATCAGGTGTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGAGGACCCAAGCCAAAGGCCCGCAGGACGACGAGTGCGAGCAGTTTGTCGACATCTTGTTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATAAAGTTTTGGAACAAATTGAAGTGCAAGATAGAAATCACCAAGCGTTAG

Protein sequence

MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRRVRAVCRHLVPHKKRLNYKLNLIKFWNKLKCKIEITKR
Homology
[Close]
BLAST of MELO3C034322 vs. NCBI nr
Match: KAA0048153.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 0 

Query: 2   FVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRR 61
           FV QAAEDAHNQMLELQSQPT  VVSHSLRMRYAIRCW+DDQATQKALV DPS+RPA R+
Sbjct: 848 FVSQAAEDAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQ 907

Query: 62  VRAVCRHLV--PHKKRLNYKLNLIKFWNKLKCKIEITK 98
           V+AV RHLV  P KKRLNYKLN +K WN LK KIEITK
Sbjct: 908 VQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITK 945

[Close]
BLAST of MELO3C034322 vs. NCBI nr
Match: TYK08102.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 2    FVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRR 61
            FV QAAEDAHNQMLELQSQPT  VVSHSLRMRYAIRCW+DDQATQKALV DPS+RPA R+
Sbjct: 935  FVSQAAEDAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQ 994

Query: 62   VRAVCRHLV--PHKKRLNYKLNLIKFWNKLKCKI 94
            V+AV RHLV  P KKRLNYKLN +K WN LK K+
Sbjct: 995  VQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKIKL 1028

[Close]
BLAST of MELO3C034322 vs. NCBI nr
Match: KAA0051501.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 5.8e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR 60
           MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR
Sbjct: 86  MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR 145

Query: 61  RVRAV 66
           RVRAV
Sbjct: 146 RVRAV 150

[Close]
BLAST of MELO3C034322 vs. NCBI nr
Match: TYK11054.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 24  RVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRRVRAVCRHLV--PHKKRLNYKLN 83
           RVVSHSLRMRYAIRCW+DDQATQKALV DPS+R  G+RVRAV RHLV  PHKKRLNYKLN
Sbjct: 231 RVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRLVGQRVRAVPRHLVRTPHKKRLNYKLN 290

Query: 84  LIKFWNKLKCKIEITK 98
           LIK WN+LKCKIEITK
Sbjct: 291 LIKLWNRLKCKIEITK 306

[Close]
BLAST of MELO3C034322 vs. NCBI nr
Match: TYK28852.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 23  QRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRRVRAVCRHLV--PHKKRLNYKL 82
           QRVVSHSLRMRYAIRCW+DD+ TQKALV DPS+RPA RRV+AVCRHLV  P KKRLNYKL
Sbjct: 186 QRVVSHSLRMRYAIRCWVDDETTQKALVGDPSRRPAERRVQAVCRHLVRSPQKKRLNYKL 245

Query: 83  NLIKFWNKLKCKIEITK 98
           N +K WN+LK KIEITK
Sbjct: 246 NFMKLWNRLKYKIEITK 262

[Close]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match: A0A5A7TX19 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00520 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 0 

Query: 2   FVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRR 61
           FV QAAEDAHNQMLELQSQPT  VVSHSLRMRYAIRCW+DDQATQKALV DPS+RPA R+
Sbjct: 848 FVSQAAEDAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQ 907

Query: 62  VRAVCRHLV--PHKKRLNYKLNLIKFWNKLKCKIEITK 98
           V+AV RHLV  P KKRLNYKLN +K WN LK KIEITK
Sbjct: 908 VQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITK 945

[Close]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match: A0A5D3C9X5 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002630 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 2    FVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRR 61
            FV QAAEDAHNQMLELQSQPT  VVSHSLRMRYAIRCW+DDQATQKALV DPS+RPA R+
Sbjct: 935  FVSQAAEDAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQ 994

Query: 62   VRAVCRHLV--PHKKRLNYKLNLIKFWNKLKCKI 94
            V+AV RHLV  P KKRLNYKLN +K WN LK K+
Sbjct: 995  VQAVRRHLVRSPQKKRLNYKLNFMKLWNGLKIKL 1028

[Close]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match: A0A5A7UD82 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00220 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.8e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR 60
           MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR
Sbjct: 86  MFVLQAAEDAHNQMLELQSQPTQRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGR 145

Query: 61  RVRAV 66
           RVRAV
Sbjct: 146 RVRAV 150

[Close]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match: A0A5D3CIP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00370 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.2e-27
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 24  RVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRRVRAVCRHLV--PHKKRLNYKLN 83
           RVVSHSLRMRYAIRCW+DDQATQKALV DPS+R  G+RVRAV RHLV  PHKKRLNYKLN
Sbjct: 231 RVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRLVGQRVRAVPRHLVRTPHKKRLNYKLN 290

Query: 84  LIKFWNKLKCKIEITK 98
           LIK WN+LKCKIEITK
Sbjct: 291 LIKLWNRLKCKIEITK 306

[Close]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match: A0A5D3DZ15 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00610 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.0e-26
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 23  QRVVSHSLRMRYAIRCWIDDQATQKALVEDPSQRPAGRRVRAVCRHLV--PHKKRLNYKL 82
           QRVVSHSLRMRYAIRCW+DD+ TQKALV DPS+RPA RRV+AVCRHLV  P KKRLNYKL
Sbjct: 186 QRVVSHSLRMRYAIRCWVDDETTQKALVGDPSRRPAERRVQAVCRHLVRSPQKKRLNYKL 245

Query: 83  NLIKFWNKLKCKIEITK 98
           N +K WN+LK KIEITK
Sbjct: 246 NFMKLWNRLKYKIEITK 262

The following BLAST results are available for this feature:
BLAST of MELO3C034322 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048153.11.1e-3381.63reverse transcriptase [Cucumis melo var. makuwa][more]
TYK08102.13.0e-3179.79Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0051501.15.8e-27100.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK11054.11.3e-2685.53NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK28852.11.9e-2580.52NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C034322 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TX195.3e-3481.63Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63... [more]
A0A5D3C9X51.4e-3179.79Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UD822.8e-27100.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CIP66.2e-2785.53NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DZ159.0e-2680.52NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C034322 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034322.1MELO3C034322.1mRNA