MELO3C034278 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034278
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Homeobox-leucine zipper protein HDG2
Location	chr10: 7183532 .. 7184268 (+)
RNA-Seq Expression	MELO3C034278
Synteny	MELO3C034278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTACGGTTATTCTAAGGTAATTATTATTTTTTTAATGAACAAATTGAGATATTTTTACTATATATAGTAGTAAAAACAAATTACACGTTGTCTAATTATCAATCATTATATTTAATTTAAGTTTTAGAAAATTAGGCACTAAATTGGTGTGTGTGTTTTGAATGATATGTATAGGTTACATGGGCTGAGCATGTTGAGGTGGATGATTGTAGTGTCCACAGTTTATACAACCAACTAGTTAGCTCTGGCCACACGTTCAACGCAAAGCGTTGGATTGCCACGTTGGATCGTCAATGTGAAGTCCAGTATATGTGATTGTTCATTTCTTAGAGGGCCAAACACCATTATGTGAAGCCGAGAGATCATGTAGATAGCCAGGCGATCAGGTAATATCTATTTTTAGGCCACATTTTTTTTTTCTAGATGCCTTGTTATAATTCTTAAGATTAAATGGTTTATTTTGATATTGTTTGTAGAATGATTGAAATCATATCGGGTTGAAAGCTAAGTGATTGTGTAAATAGCCAGCGACCATTGAAGGTTGAAGATTGAGAAGGCGTTTAGGATTTCTCATTTAAGTATTGTATTAAGATTTTTTTTCATGTATTGTTGTAAAATGTATATATAAACACAATATTAATTTTCATTTTGTGTATATACAAATGCAAAAGACAAATATTATAGTTTCTAAAATAATATTAATTTTATTGATTTGTTGGCGTGAGAAAAAAA

mRNA sequence

ATGCCCTACGGTTATTCTAAGGTTACATGGGCTGAGCATGTTGAGGTGGATGATTGTAGTGTCCACAGTTTATACAACCAACTAGTTAGCTCTGGCCACACGTTCAACGCAAAGCGTTGGATTGCCACGTTGGATCGTCAATGTGAAGTCCAGGCCAAACACCATTATGTGAAGCCGAGAGATCATGTAGATAGCCAGGCGATCAGAATGATTGAAATCATATCGGGTTGAAAGCTAAGTGATTGTGTAAATAGCCAGCGACCATTGAAGGTTGAAGATTGAGAAGGCGTTTAGGATTTCTCATTTAAGTATTGTATTAAGATTTTTTTTCATGTATTGTTGTAAAATGTATATATAAACACAATATTAATTTTCATTTTGTGTATATACAAATGCAAAAGACAAATATTATAGTTTCTAAAATAATATTAATTTTATTGATTTGTTGGCGTGAGAAAAAAA

Coding sequence (CDS)

ATGCCCTACGGTTATTCTAAGGTTACATGGGCTGAGCATGTTGAGGTGGATGATTGTAGTGTCCACAGTTTATACAACCAACTAGTTAGCTCTGGCCACACGTTCAACGCAAAGCGTTGGATTGCCACGTTGGATCGTCAATGTGAAGTCCAGGCCAAACACCATTATGTGAAGCCGAGAGATCATGTAGATAGCCAGGCGATCAGAATGATTGAAATCATATCGGGTTGA

Protein sequence

MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQAKHHYVKPRDHVDSQAIRMIEIISG

Homology

[Close]

BLAST of MELO3C034278 vs. NCBI nr
Match: KAA0051620.1 (homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa] >TYK30794.1 homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 3.3e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ 52
           MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ
Sbjct: 242 MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ 292

[Close]

BLAST of MELO3C034278 vs. NCBI nr
Match: TYK07095.1 (homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. NCBI nr
Match: XP_038888692.1 (homeobox-leucine zipper protein HDG2-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 447 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 495

[Close]

BLAST of MELO3C034278 vs. NCBI nr
Match: KAA0040254.1 (homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. NCBI nr
Match: XP_004144488.1 (homeobox-leucine zipper protein HDG2 [Cucumis sativus] >KGN43533.1 hypothetical protein Csa_020348 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot
Match: Q94C37 (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana OX=3702 GN=HDG2 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-16
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EHVEVDD  VH+LY  +VS+GH F AKRW+A LDRQCE
Sbjct: 416 LPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCE 464

[Close]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot
Match: Q6ZAR0 (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-16
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD SVH++Y  LV+SG  F AKRW+ TLDRQCE
Sbjct: 470 MPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCE 518

[Close]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot
Match: Q0J9X2 (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC2 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-15
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD SVH++Y  LV+SG  F A+RW+ TLDRQCE
Sbjct: 471 MPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCE 519

[Close]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot
Match: Q93V99 (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=PDF2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EH+EVDD SVH++Y  LV SG  F AKRW+ATL+RQCE
Sbjct: 424 LPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGAKRWVATLERQCE 472

[Close]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot
Match: Q8RWU4 (Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana OX=3702 GN=ATML1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 4   GYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           GYSKVTW EH+EVDD SVH++Y  LV++G  F AKRW+ATLDRQCE
Sbjct: 435 GYSKVTWVEHIEVDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCE 480

[Close]

BLAST of MELO3C034278 vs. ExPASy TrEMBL
Match: A0A5A7U8Z1 (Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00190 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ 52
           MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ
Sbjct: 242 MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCEVQ 292

[Close]

BLAST of MELO3C034278 vs. ExPASy TrEMBL
Match: A0A5A7T9U8 (Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold888G00400 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. ExPASy TrEMBL
Match: A0A5D3C6P4 (Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004130 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. ExPASy TrEMBL
Match: A0A0A0K266 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044240 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. ExPASy TrEMBL
Match: A0A1S3C111 (homeobox-leucine zipper protein HDG2 OS=Cucumis melo OX=3656 GN=LOC103495586 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           MP GYSKVTW EHVEVDD  VHSLYNQLVSSGH F AKRWIATLDRQCE
Sbjct: 449 MPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCE 497

[Close]

BLAST of MELO3C034278 vs. TAIR 10
Match: AT1G05230.1 (homeodomain GLABROUS 2 )

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EHVEVDD  VH+LY  +VS+GH F AKRW+A LDRQCE
Sbjct: 416 LPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCE 464

[Close]

BLAST of MELO3C034278 vs. TAIR 10
Match: AT1G05230.2 (homeodomain GLABROUS 2 )

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EHVEVDD  VH+LY  +VS+GH F AKRW+A LDRQCE
Sbjct: 416 LPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCE 464

[Close]

BLAST of MELO3C034278 vs. TAIR 10
Match: AT1G05230.3 (homeodomain GLABROUS 2 )

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EHVEVDD  VH+LY  +VS+GH F AKRW+A LDRQCE
Sbjct: 416 LPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCE 464

[Close]

BLAST of MELO3C034278 vs. TAIR 10
Match: AT1G05230.4 (homeodomain GLABROUS 2 )

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EHVEVDD  VH+LY  +VS+GH F AKRW+A LDRQCE
Sbjct: 416 LPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCE 464

[Close]

BLAST of MELO3C034278 vs. TAIR 10
Match: AT4G04890.1 (protodermal factor 2 )

HSP 1 Score: 80.5 bits (197), Expect = 6.5e-16
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MPYGYSKVTWAEHVEVDDCSVHSLYNQLVSSGHTFNAKRWIATLDRQCE 50
           +P GYSKVTW EH+EVDD SVH++Y  LV SG  F AKRW+ATL+RQCE
Sbjct: 424 LPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGAKRWVATLERQCE 472

The following BLAST results are available for this feature:

BLAST of MELO3C034278 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051620.1	3.3e-22	100.00	homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa] >TYK30794.1 home...	[more]
TYK07095.1	1.6e-16	87.76	homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa]	[more]
XP_038888692.1	1.6e-16	87.76	homeobox-leucine zipper protein HDG2-like [Benincasa hispida]	[more]
KAA0040254.1	1.6e-16	87.76	homeobox-leucine zipper protein HDG2 [Cucumis melo var. makuwa]	[more]
XP_004144488.1	1.6e-16	87.76	homeobox-leucine zipper protein HDG2 [Cucumis sativus] >KGN43533.1 hypothetical ...	[more]

BLAST of MELO3C034278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C37	4.8e-16	71.43	Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana OX=3702 GN=HDG2 PE=...	[more]
Q6ZAR0	6.3e-16	73.47	Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q0J9X2	3.1e-15	71.43	Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q93V99	9.1e-15	69.39	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana OX=...	[more]
Q8RWU4	2.0e-14	71.74	Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of MELO3C034278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8Z1	1.6e-22	100.00	Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T9U8	7.7e-17	87.76	Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C6P4	7.7e-17	87.76	Homeobox-leucine zipper protein HDG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0K266	7.7e-17	87.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044240 PE=3 SV=1	[more]
A0A1S3C111	7.7e-17	87.76	homeobox-leucine zipper protein HDG2 OS=Cucumis melo OX=3656 GN=LOC103495586 PE=...	[more]

BLAST of MELO3C034278 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05230.1	3.4e-17	71.43	homeodomain GLABROUS 2	[more]
AT1G05230.2	3.4e-17	71.43	homeodomain GLABROUS 2	[more]
AT1G05230.3	3.4e-17	71.43	homeodomain GLABROUS 2	[more]
AT1G05230.4	3.4e-17	71.43	homeodomain GLABROUS 2	[more]
AT4G04890.1	6.5e-16	69.39	protodermal factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002913	START domain	PFAM	PF01852	START	coord: 4..49 e-value: 7.7E-11 score: 41.8
IPR002913	START domain	PROSITE	PS50848	START	coord: 1..53 score: 10.367064
IPR042160	Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like	PANTHER	PTHR45654	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	coord: 1..52
None	No IPR available	PANTHER	PTHR45654:SF21	HOMEOBOX LEUCINE ZIPPER PROTEIN	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034278.1	MELO3C034278.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008289	lipid binding