MELO3C034247 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034247
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glial fibrillary acidic protein-like
Location	chr01: 16634698 .. 16634925 (+)
RNA-Seq Expression	MELO3C034247
Synteny	MELO3C034247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAG

mRNA sequence

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAG

Coding sequence (CDS)

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAG

Protein sequence

MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKRLLRNIADLHEEMEAKK

Homology

[Close]

BLAST of MELO3C034247 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIADLHEEMEAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

[Close]

BLAST of MELO3C034247 vs. NCBI nr
Match: TYK12200.1 (uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIADLHEEMEAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

[Close]

BLAST of MELO3C034247 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIA+LHEE+EAKK
Sbjct: 61 LLRNIANLHEEIEAKK 76

[Close]

BLAST of MELO3C034247 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIADLHEEMEAKK 77
           LLRNIA+LHEE+EA+K
Sbjct: 87  LLRNIANLHEEIEAEK 102

[Close]

BLAST of MELO3C034247 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 349 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 408

Query: 61  LLRNIADLHEEMEAKK 77
           LLRNIA+LHEE+EAKK
Sbjct: 409 LLRNIANLHEEIEAKK 424

[Close]

BLAST of MELO3C034247 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIADLHEEMEAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

[Close]

BLAST of MELO3C034247 vs. ExPASy TrEMBL
Match: A0A5D3CLA9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001510 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIADLHEEMEAKK
Sbjct: 61 LLRNIADLHEEMEAKK 76

[Close]

BLAST of MELO3C034247 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIA+LHEE+EAKK
Sbjct: 61 LLRNIANLHEEIEAKK 76

[Close]

BLAST of MELO3C034247 vs. ExPASy TrEMBL
Match: A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIADLHEEMEAKK 77
           LLRNIA+LHEE+EA+K
Sbjct: 87  LLRNIANLHEEIEAEK 102

[Close]

BLAST of MELO3C034247 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 285 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 344

Query: 61  LLRNIADLHEEMEAKK 77
           LLRNIA+LHEE+EAKK
Sbjct: 345 LLRNIANLHEEIEAKK 360

The following BLAST results are available for this feature:

BLAST of MELO3C034247 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049672.1	2.5e-30	100.00	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]
TYK12200.1	2.5e-30	100.00	uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa]	[more]
KAA0065294.1	6.3e-29	96.05	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
XP_008464352.1	8.2e-29	96.05	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]
TYK16834.1	3.1e-28	94.74	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034247 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1L8	1.2e-30	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CLA9	1.2e-30	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VDD9	3.0e-29	96.05	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CLQ1	4.0e-29	96.05	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]
A0A5A7SNY0	1.5e-28	94.74	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C034247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034247.1	MELO3C034247.1	mRNA