MELO3C034246 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034246
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glial fibrillary acidic protein-like
Location	chr10: 18600162 .. 18600568 (-)
RNA-Seq Expression	MELO3C034246
Synteny	MELO3C034246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGGAGGTCGAGGTTCTATGATAATCAGTTAAAGAATACAAGTCTCAGCTTATAGAAGTGAAAAGCAAAAACAGATTTCTACAAAAAGTCGTTAATAATTCTAAAGGCTAGGTGCTGATATGTCGCAAGGCAAGGAAGGTCGCAACATATGACTACGCTTAATTAATAGAAAAATATCAAGAAATGTAGATAGATTTCATGATATGGAGGGATGTGTACGACACATTGAGACGCAAGTATGACGGTGCTAGAGGTCAGATAGAACAAGAGGCTGAAAAATTAAGACAACTGGTAAGGATGGCGATCAATTCTCAGTGCAAGCTAGGACTCTTCGGCAAGGTGTTATACCTACACGTGACACCAATAGAGAATTGTCTCGTTTTCTAAGAATCATAGGGCAATTCCT

mRNA sequence

TGTGGAGGTCGAGGTTCTATGATAATCAGTTAAAGAATACAAGTCTCAGCTTATAGAAGTGAAAAGCAAAAACAGATTTCTACAAAAAGTCGTTAATAATTCTAAAGGCTAGGTGCTGATATGTCGCAAGGCAAGGAAGGTCGCAACATATGACTACGCTTAATTAATAGAAAAATATCAAGAAATGTAGATAGATTTCATGATATGGAGGGATGTGTACGACACATTGAGACGCAAGTATGACGGTGCTAGAGGTCAGATAGAACAAGAGGCTGAAAAATTAAGACAACTGGTAAGGATGGCGATCAATTCTCAGTGCAAGCTAGGACTCTTCGGCAAGGTGTTATACCTACACGTGACACCAATAGAGAATTGTCTCGTTTTCTAAGAATCATAGGGCAATTCCT

Coding sequence (CDS)

ATGATATGGAGGGATGTGTACGACACATTGAGACGCAAGTATGACGGTGCTAGAGGTCAGATAGAACAAGAGGCTGAAAAATTAAGACAACTGGTAAGGATGGCGATCAATTCTCAGTGCAAGCTAGGACTCTTCGGCAAGGTGTTATACCTACACGTGACACCAATAGAGAATTGTCTCGTTTTCTAA

Protein sequence

MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKVLYLHVTPIENCLVF

Homology

[Close]

BLAST of MELO3C034246 vs. NCBI nr
Match: TYK28968.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV 49
           MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV
Sbjct: 107 MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV 154

[Close]

BLAST of MELO3C034246 vs. NCBI nr
Match: TYK10943.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMA 36
          M+WRD Y+TLRRKYDGARGQ+E+ AEKLRQ+VRMA
Sbjct: 6  MMWRDEYETLRRKYDGARGQMERGAEKLRQMVRMA 40

[Close]

BLAST of MELO3C034246 vs. NCBI nr
Match: KAA0051514.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRM 35
           MIWR+ Y+TLRRKYDGARGQ+EQ  EKLRQ+ RM
Sbjct: 108 MIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARM 141

[Close]

BLAST of MELO3C034246 vs. NCBI nr
Match: KAA0037718.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMA 36
           M+WRD Y+TLR KYDGARGQ+E+ A+KLRQ+VRMA
Sbjct: 94  MMWRDEYETLRCKYDGARGQMERGAKKLRQMVRMA 128

[Close]

BLAST of MELO3C034246 vs. NCBI nr
Match: KAA0046477.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYJ97734.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRM 35
          M+WRD Y+ LRRKYDGARGQ+EQ AEKLRQ+ R+
Sbjct: 6  MMWRDEYEILRRKYDGARGQMEQGAEKLRQMTRI 39

[Close]

BLAST of MELO3C034246 vs. ExPASy TrEMBL
Match: A0A5D3DZT4 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00640 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV 49
           MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV
Sbjct: 107 MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMAINSQCKLGLFGKV 154

[Close]

BLAST of MELO3C034246 vs. ExPASy TrEMBL
Match: A0A5D3CGB5 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00250 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMA 36
          M+WRD Y+TLRRKYDGARGQ+E+ AEKLRQ+VRMA
Sbjct: 6  MMWRDEYETLRRKYDGARGQMERGAEKLRQMVRMA 40

[Close]

BLAST of MELO3C034246 vs. ExPASy TrEMBL
Match: A0A5A7U875 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00580 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRM 35
           MIWR+ Y+TLRRKYDGARGQ+EQ  EKLRQ+ RM
Sbjct: 108 MIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARM 141

[Close]

BLAST of MELO3C034246 vs. ExPASy TrEMBL
Match: A0A5A7T4I7 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRMA 36
           M+WRD Y+TLR KYDGARGQ+E+ A+KLRQ+VRMA
Sbjct: 94  MMWRDEYETLRCKYDGARGQMERGAKKLRQMVRMA 128

[Close]

BLAST of MELO3C034246 vs. ExPASy TrEMBL
Match: A0A5D3BF90 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00340 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MIWRDVYDTLRRKYDGARGQIEQEAEKLRQLVRM 35
          M+WRD Y+ LRRKYDGARGQ+EQ AEKLRQ+ R+
Sbjct: 6  MMWRDEYEILRRKYDGARGQMEQGAEKLRQMTRI 39

The following BLAST results are available for this feature:

BLAST of MELO3C034246 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28968.1	6.9e-18	100.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
TYK10943.1	1.2e-06	80.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0051514.1	3.0e-05	76.47	glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glia...	[more]
KAA0037718.1	3.0e-05	74.29	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0046477.1	5.1e-05	73.53	glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYJ97734.1 glia...	[more]

BLAST of MELO3C034246 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZT4	3.3e-18	100.00	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CGB5	5.9e-07	80.00	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U875	1.5e-05	76.47	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T4I7	1.5e-05	74.29	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BF90	2.5e-05	73.53	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C034246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034246.1	MELO3C034246.1	mRNA