MELO3C034230 (gene) Melon (DHL92) v4

Overview
NameMELO3C034230
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr10: 17757667 .. 17758126 (-)
RNA-Seq ExpressionMELO3C034230
SyntenyMELO3C034230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAATGCAAGACTTCTTGATGTTGCAGATGATCCACAATAAGTCCTTGATAATCCACAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGTATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTAAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTGCAAACACAGAGCCAAATTGGTTATGGTAGTCCGATGACGATGATACCAACATTTGGAACAGGATATTGTGATTCTGAGGTCGGTACAAGATATTATGATGCAAGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCGACTTCTTACATGCATGGACACAAACGTGGCTATGGGAAACATAACAAATATTTGTATCATGTGTATCATGAAGCACCTGTAGAGGTATAGATCGACAA

mRNA sequence

AGATCGAACAATGCAAGACTTCTTGATGTTGCAGATGATCCACAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGTATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTAAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTGCAAACACAGAGCCAAATTGGTTATGGTAGTCCGATGACGATGATACCAACATTTGGAACAGGATATTGTGATTCTGAGGTCGGTACAAGATATTATGATGCAAGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCGACTTCTTACATGCATGGACACAAACGTGGCTATGGGAAACATAACAAATATTTGTATCATGTGTATCATGAAGCACCTGTAGAGGTATAGATCGACAA

Coding sequence (CDS)

ATGCAAGACTTCTTGATGTTGCAGATGATCCACAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGTATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTAAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTGCAAACACAGAGCCAAATTGGTTATGGTAG

Protein sequence

MQDFLMLQMIHNKSLIYIIIMRGTWRSMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPPANTEPNWLW
Homology
[Close]
BLAST of MELO3C034230 vs. NCBI nr
Match: TYJ98099.1 (hypothetical protein E5676_scaffold222G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.9e-13
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 28 MYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVP--PANTEPNWLW 72
          MYDLPIVPPPVHRGRVRVEEA+LDEVYHNVEE      NTEPNWLW
Sbjct: 1  MYDLPIVPPPVHRGRVRVEEAELDEVYHNVEESASYDTNTEPNWLW 46

[Close]
BLAST of MELO3C034230 vs. NCBI nr
Match: KAA0054576.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27540.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.5e-12
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP-ANTEPNWLW 72
           +MYDLPIVPP VHRGRVRVEE +L+EVYHNVEE+PP  +TE NWLW
Sbjct: 69  NMYDLPIVPPTVHRGRVRVEEVELNEVYHNVEELPPTTDTESNWLW 114

[Close]
BLAST of MELO3C034230 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
           +MYDL IVPPPVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 181 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPP 216

[Close]
BLAST of MELO3C034230 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
           +MYDL IVPPPVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 172 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPP 207

[Close]
BLAST of MELO3C034230 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 28 MYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
          MYDLPIVP PVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPP 35

[Close]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match: A0A5D3BGC8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 28 MYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVP--PANTEPNWLW 72
          MYDLPIVPPPVHRGRVRVEEA+LDEVYHNVEE      NTEPNWLW
Sbjct: 1  MYDLPIVPPPVHRGRVRVEEAELDEVYHNVEESASYDTNTEPNWLW 46

[Close]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match: A0A5D3DW79 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00070 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP-ANTEPNWLW 72
           +MYDLPIVPP VHRGRVRVEE +L+EVYHNVEE+PP  +TE NWLW
Sbjct: 69  NMYDLPIVPPTVHRGRVRVEEVELNEVYHNVEELPPTTDTESNWLW 114

[Close]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
           +MYDL IVPPPVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 181 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPP 216

[Close]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 27  SMYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
           +MYDL IVPPPVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 172 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPP 207

[Close]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 28 MYDLPIVPPPVHRGRVRVEEAKLDEVYHNVEEVPP 63
          MYDLPIVP PVHRGRVRVEEA+LDEVYHNVEEVPP
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPP 35

The following BLAST results are available for this feature:
BLAST of MELO3C034230 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98099.15.9e-1384.78hypothetical protein E5676_scaffold222G00100 [Cucumis melo var. makuwa][more]
KAA0054576.16.5e-1278.26mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.17.9e-1091.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.17.9e-1091.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK16354.11.0e-0994.29GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C034230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BGC82.8e-1384.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DW793.1e-1278.26Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF83.8e-1091.67Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH233.8e-1091.67Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CZG95.0e-1094.29GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C034230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034230.1MELO3C034230.1mRNA