MELO3C034185 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034185
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr10: 13039574 .. 13040625 (-)
RNA-Seq Expression	MELO3C034185
Synteny	MELO3C034185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGGCATTTACAATGTGGGTAAGGACATCCACATATTGACAACCAACAAGCGCCCTTTAAAACATGCTGAAGATAATCAAAGCAGCAATGATGATCGTCATTGGAAGAGACCCCAAAGGTCTGTTAAACAATCAATTGGTGATGAAAAGCCTCATATTGAAGTTCCCGACGTCACACAGTTTTTTGACATTAACTCTCCCATGGTTTCTTTTCATTCCCTTTTATTATTATTATTATTATTATTATTATTTGACGTACCCCTTTTACTCTCAATCTCATTTCTTATTGTTAACATTATTTTGCAGTCCTCTTTAGGTGATCGTGTCTTACACATCGAAGGAACCTCAAAGCTGATGGCGAGCCCAAAAGTCCCTTCAACGAGTGAAAACTCTAAGAAACCTATAGGTGCAACTACTGTGTCAACTCGTCCTCTTGTGATCAAGGGGTCCGCTCAACAAGTGGAAGGAACGAAGTCTATCACAGCTTTTGAGATTTCTCATTTTTGTGCAGACAAATTAATTTATGATCTCTGATGACAGATTGCCATAACTTTGTGGGAAAGCTTACGATAGAAGATCATTCGTTTTCCTTTTGAGCGAGTAACTAGCCTTGAACGAGAAATGCATAAGATCTTTGATGCAATTGCGACTAGTGGCAGCAATGGTTACTTCCAAGGTGTCAAGAACCATAATCAAATGCATTCCTCAATTTTGCTCCAATCAACTAAGACTCTGCAACTTGATGAGAACCGTATATTGGAGCAGACAAGCACTATCAAACGTCGTCTTGCACGACTATCAGCTAAGAAGGCTAAACTAGAAGCAAAATTAAAAGTGGTTCGGATAATTTACCAAACTTTTTGGCATAATTTCCAAGAACAACATGGAGCTGAAGCAGAAGTAACATGATATTTCAAAGACTTGCGAGGAAATTGACAAACTTGAATGTACCCCAATCGTTAGAGATGTCAATGCAAAAATGTTGTCAGCACTTCATGAATCTGTAGAAAAGACACTAGAGAAGCTGAAGAACCTTAAATGGAACCCTTGA

mRNA sequence

AAGTGGCATTTACAATGTGGGTAAGGACATCCACATATTGACAACCAACAAGCGCCCTTTAAAACATGCTGAAGATAATCAAAGCAGCAATGATGATCGTCATTGGAAGAGACCCCAAAGGTCTGTTAAACAATCAATTGGTGATGAAAAGCCTCATATTGAAGTTCCCGACGTCACACAGTTTTTTGACATTAACTCTCCCATGTCCTCTTTAGGTGATCGTGTCTTACACATCGAAGGAACCTCAAAGCTGATGGCGAGCCCAAAAGTCCCTTCAACGAGTGAAAACTCTAAGAAACCTATAGGTGCAACTACTGTGTCAACTCGTCCTCTTGTGATCAAGGGGTCCGCTCAACAAGTGGAAGGAACGAAGTCTATCACAGCTTTTGAGATTTCTCATTTTTGTGCAGACAAATTAATTTATGATCTCTGATGACAGATTGCCATAACTTTGTGGGAAAGCTTACGATAGAAGATCATTCGTTTTCCTTTTGAGCGAGTAACTAGCCTTGAACGAGAAATGCGTGTCAAGAACCATAATCAAATGCATTCCTCAATTTTGCTCCAATCAACTAAGACTCTGCAACTTGATGAGAACCGTATATTGGAGCAGACAAGCACTATCAAACGTCGTCTTGCACGACTATCAGCTAAGAAGGCTAAACTAGAAGCAAAATTAAAAGTGGTTCGGATAATTTACCAAACTTTTTGGCATAATTTCCAAGAACAACATGGAGCTGAAGCAGAAGTAACATGATATTTCAAAGACTTGCGAGGAAATTGACAAACTTGAATGTACCCCAATCGTTAGAGATGTCAATGCAAAAATGTTGTCAGCACTTCATGAATCTGTAGAAAAGACACTAGAGAAGCTGAAGAACCTTAAATGGAACCCTTGA

Coding sequence (CDS)

AGTGGCATTTACAATGTGGGTAAGGACATCCACATATTGACAACCAACAAGCGCCCTTTAAAACATGCTGAAGATAATCAAAGCAGCAATGATGATCGTCATTGGAAGAGACCCCAAAGGTCTGTTAAACAATCAATTGGTGATGAAAAGCCTCATATTGAAGTTCCCGACGTCACACAGTTTTTTGACATTAACTCTCCCATGTCCTCTTTAGGTGATCGTGTCTTACACATCGAAGGAACCTCAAAGCTGATGGCGAGCCCAAAAGTCCCTTCAACGAGTGAAAACTCTAAGAAACCTATAGGTGCAACTACTGTGTCAACTCGTCCTCTTGTGATCAAGGGGTCCGCTCAACAAGTGGAAGGAACGAAGTCTATCACAGCTTTTGAGATTTCTCATTTTTGTGCAGACAAATTAATTTATGATCTCTGA

Protein sequence

SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQFFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQVEGTKSITAFEISHFCADKLIYDL

Homology

[Close]

BLAST of MELO3C034185 vs. NCBI nr
Match: TYK22414.1 (uncharacterized protein E5676_scaffold530G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ
Sbjct: 27  SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 86

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV
Sbjct: 87  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 146

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EGTKSITAFEISHFCADKLIYDL
Sbjct: 147 EGTKSITAFEISHFCADKLIYDL 169

[Close]

BLAST of MELO3C034185 vs. NCBI nr
Match: TYK22840.1 (uncharacterized protein E5676_scaffold115G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 3.4e-44
Identity = 105/143 (73.43%), Postives = 111/143 (77.62%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NVGKDIHILTT K    H ED+QS+NDDRH KRP+RS KQSI DEK  IEV DV Q
Sbjct: 125 SGTDNVGKDIHILTTGKCLSTHTEDSQSNNDDRHLKRPKRSDKQSIDDEKAPIEVFDVAQ 184

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI S MSSLGD VL IEGTSK M SP+V S SENSK PIGAT +STRPLVIK S Q+V
Sbjct: 185 FFDITSLMSSLGDHVLQIEGTSKPMVSPEVLSISENSKIPIGATAMSTRPLVIKASPQRV 244

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EG K ITA EISHFCAD LI DL
Sbjct: 245 EGLKPITASEISHFCADNLISDL 267

[Close]

BLAST of MELO3C034185 vs. NCBI nr
Match: KAA0033822.1 (uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 7.6e-44
Identity = 101/143 (70.63%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NV KD+H LTT K P  H ED  ++NDDRHWKRP+RS KQSI DEKP IEV DV Q
Sbjct: 432 SGADNVRKDLHKLTTEKLPSTHTEDIHNNNDDRHWKRPKRSDKQSIDDEKPPIEVLDVAQ 491

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI SPMSSLGD  L IEGTSK MASP+  S SENSK PIGATT+ST PLV K S QQV
Sbjct: 492 FFDITSPMSSLGDHTLQIEGTSKPMASPEDLSASENSKTPIGATTMSTCPLVTKASPQQV 551

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
            GT+ IT  EISHFCAD LI DL
Sbjct: 552 GGTEPITTSEISHFCADNLISDL 574

[Close]

BLAST of MELO3C034185 vs. NCBI nr
Match: KAA0026036.1 (uncharacterized protein E6C27_scaffold581G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-43
Identity = 103/143 (72.03%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NVGKDIHILTT K    H ED+QS+NDDRH KRP+RS KQSI DEK  IEV DV Q
Sbjct: 125 SGTDNVGKDIHILTTGKCLSTHTEDSQSNNDDRHLKRPKRSDKQSIDDEKAPIEVFDVAQ 184

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI S MS LGD VL IEGTSK M SP+V S SEN K PIGAT +STRPLVIK S Q+V
Sbjct: 185 FFDITSLMSFLGDHVLQIEGTSKPMVSPEVLSISENFKIPIGATAMSTRPLVIKASPQRV 244

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EG K ITA EISHFCAD LI DL
Sbjct: 245 EGLKPITASEISHFCADNLISDL 267

[Close]

BLAST of MELO3C034185 vs. NCBI nr
Match: TYK21863.1 (uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 101/177 (57.06%), Postives = 108/177 (61.02%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NV KD+H LTT K P  H ED  ++NDDRHWKRP+RS KQSI DEKP IEV DV Q
Sbjct: 432 SGADNVRKDLHKLTTEKLPSTHTEDIHNNNDDRHWKRPKRSDKQSIDDEKPPIEVLDVAQ 491

Query: 61  FFDINSPM----------------------------------SSLGDRVLHIEGTSKLMA 120
           FFDI SPM                                  SSLGD  L IEGTSK MA
Sbjct: 492 FFDITSPMVSFHLLLLFFFFFFFXLYTLLFSISFIVVNLILQSSLGDHTLQIEGTSKPMA 551

Query: 121 SPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQVEGTKSITAFEISHFCADKLIYDL 144
           SP+  S SENSK PIGATT+ST PLV K S QQV GT+ IT  EISHFCAD LI DL
Sbjct: 552 SPEDLSASENSKTPIGATTMSTCPLVTKASPQQVGGTEPITTSEISHFCADNLISDL 608

[Close]

BLAST of MELO3C034185 vs. ExPASy TrEMBL
Match: A0A5D3DFN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00090 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 9.9e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ
Sbjct: 27  SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 86

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV
Sbjct: 87  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 146

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EGTKSITAFEISHFCADKLIYDL
Sbjct: 147 EGTKSITAFEISHFCADKLIYDL 169

[Close]

BLAST of MELO3C034185 vs. ExPASy TrEMBL
Match: A0A5D3DHK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00220 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44
Identity = 105/143 (73.43%), Postives = 111/143 (77.62%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NVGKDIHILTT K    H ED+QS+NDDRH KRP+RS KQSI DEK  IEV DV Q
Sbjct: 125 SGTDNVGKDIHILTTGKCLSTHTEDSQSNNDDRHLKRPKRSDKQSIDDEKAPIEVFDVAQ 184

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI S MSSLGD VL IEGTSK M SP+V S SENSK PIGAT +STRPLVIK S Q+V
Sbjct: 185 FFDITSLMSSLGDHVLQIEGTSKPMVSPEVLSISENSKIPIGATAMSTRPLVIKASPQRV 244

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EG K ITA EISHFCAD LI DL
Sbjct: 245 EGLKPITASEISHFCADNLISDL 267

[Close]

BLAST of MELO3C034185 vs. ExPASy TrEMBL
Match: A0A5A7SRI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1735G00180 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44
Identity = 101/143 (70.63%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NV KD+H LTT K P  H ED  ++NDDRHWKRP+RS KQSI DEKP IEV DV Q
Sbjct: 432 SGADNVRKDLHKLTTEKLPSTHTEDIHNNNDDRHWKRPKRSDKQSIDDEKPPIEVLDVAQ 491

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI SPMSSLGD  L IEGTSK MASP+  S SENSK PIGATT+ST PLV K S QQV
Sbjct: 492 FFDITSPMSSLGDHTLQIEGTSKPMASPEDLSASENSKTPIGATTMSTCPLVTKASPQQV 551

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
            GT+ IT  EISHFCAD LI DL
Sbjct: 552 GGTEPITTSEISHFCADNLISDL 574

[Close]

BLAST of MELO3C034185 vs. ExPASy TrEMBL
Match: A0A5A7SJR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00210 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 103/143 (72.03%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NVGKDIHILTT K    H ED+QS+NDDRH KRP+RS KQSI DEK  IEV DV Q
Sbjct: 125 SGTDNVGKDIHILTTGKCLSTHTEDSQSNNDDRHLKRPKRSDKQSIDDEKAPIEVFDVAQ 184

Query: 61  FFDINSPMSSLGDRVLHIEGTSKLMASPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQV 120
           FFDI S MS LGD VL IEGTSK M SP+V S SEN K PIGAT +STRPLVIK S Q+V
Sbjct: 185 FFDITSLMSFLGDHVLQIEGTSKPMVSPEVLSISENFKIPIGATAMSTRPLVIKASPQRV 244

Query: 121 EGTKSITAFEISHFCADKLIYDL 144
           EG K ITA EISHFCAD LI DL
Sbjct: 245 EGLKPITASEISHFCADNLISDL 267

[Close]

BLAST of MELO3C034185 vs. ExPASy TrEMBL
Match: A0A5D3DEA3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold836G00160 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.1e-39
Identity = 101/177 (57.06%), Postives = 108/177 (61.02%), Query Frame = 0


Query: 1   SGIYNVGKDIHILTTNKRPLKHAEDNQSSNDDRHWKRPQRSVKQSIGDEKPHIEVPDVTQ 60
           SG  NV KD+H LTT K P  H ED  ++NDDRHWKRP+RS KQSI DEKP IEV DV Q
Sbjct: 432 SGADNVRKDLHKLTTEKLPSTHTEDIHNNNDDRHWKRPKRSDKQSIDDEKPPIEVLDVAQ 491

Query: 61  FFDINSPM----------------------------------SSLGDRVLHIEGTSKLMA 120
           FFDI SPM                                  SSLGD  L IEGTSK MA
Sbjct: 492 FFDITSPMVSFHLLLLFFFFFFFXLYTLLFSISFIVVNLILQSSLGDHTLQIEGTSKPMA 551

Query: 121 SPKVPSTSENSKKPIGATTVSTRPLVIKGSAQQVEGTKSITAFEISHFCADKLIYDL 144
           SP+  S SENSK PIGATT+ST PLV K S QQV GT+ IT  EISHFCAD LI DL
Sbjct: 552 SPEDLSASENSKTPIGATTMSTCPLVTKASPQQVGGTEPITTSEISHFCADNLISDL 608

The following BLAST results are available for this feature:

BLAST of MELO3C034185 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22414.1	2.0e-73	100.00	uncharacterized protein E5676_scaffold530G00090 [Cucumis melo var. makuwa]	[more]
TYK22840.1	3.4e-44	73.43	uncharacterized protein E5676_scaffold115G00220 [Cucumis melo var. makuwa]	[more]
KAA0033822.1	7.6e-44	70.63	uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]	[more]
KAA0026036.1	8.4e-43	72.03	uncharacterized protein E6C27_scaffold581G00210 [Cucumis melo var. makuwa]	[more]
TYK21863.1	1.3e-38	57.06	uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034185 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFN9	9.9e-74	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DHK0	1.6e-44	73.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRI5	3.7e-44	70.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SJR1	4.1e-43	72.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DEA3	6.1e-39	57.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034185.1	MELO3C034185.1	mRNA