MELO3C034080 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034080
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr09: 5448377 .. 5448684 (-)
RNA-Seq Expression	MELO3C034080
Synteny	MELO3C034080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGGATGTACGCGCATCACGACCTTCTCGCGCGTCTGAGGGTAGGGTCGGATCGAGCGAATTGAAGAGGAAAAGGGGAAGCCAACGAGAGGCGGAGCTTGAAATCATACATATGGTACTGGAGTGTACGAACGACCAACTCAGGACGATTGTGGATTGGCTTGCATGCGCCCTTATTAATGACAACCATGTGCACCGGGAATTCTTTCGCATATTGCATGAGATGTCGGAACTAACGAGTTCGGATAGGGCGTTGTTGCAAAGGCACCTTTTGTCTCGTATGGACGACATGCAGGGTTTCGTACTG

mRNA sequence

AGGAGGATGTACGCGCATCACGACCTTCTCGCGCGTCTGAGGGTAGGGTCGGATCGAGCGAATTGAAGAGGAAAAGGGGAAGCCAACGAGAGGCGGAGCTTGAAATCATACATATGGTACTGGAGTGTACGAACGACCAACTCAGGACGATTGTGGATTGGCTTGCATGCGCCCTTATTAATGACAACCATGTGCACCGGGAATTCTTTCGCATATTGCATGAGATGTCGGAACTAACGAGTTCGGATAGGGCGTTGTTGCAAAGGCACCTTTTGTCTCGTATGGACGACATGCAGGGTTTCGTACTG

Coding sequence (CDS)

GAGGATGTACGCGCATCACGACCTTCTCGCGCGTCTGAGGGTAGGGTCGGATCGAGCGAATTGAAGAGGAAAAGGGGAAGCCAACGAGAGGCGGAGCTTGAAATCATACATATGGTACTGGAGTGTACGAACGACCAACTCAGGACGATTGTGGATTGGCTTGCATGCGCCCTTATTAATGACAACCATGTGCACCGGGAATTCTTTCGCATATTGCATGAGATGTCGGAACTAACGAGTTCGGATAGGGCGTTGTTGCAAAGGCACCTTTTGTCTCGTATGGACGACATGCAGGGTTTCGTACTG

Protein sequence

EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGFVL

Homology

[Close]

BLAST of MELO3C034080 vs. NCBI nr
Match: KAA0066016.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  RVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFRILHE 74
           RVGSSELKRKRG+QREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFF ILHE
Sbjct: 134 RVGSSELKRKRGNQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHE 193

Query: 75  MSELTSSDRALLQRHLLSRMDDMQGFVL 103
           MSELTS DRALLQRHLLSRMDDMQGFVL
Sbjct: 194 MSELTSLDRALLQRHLLSRMDDMQGFVL 221

[Close]

BLAST of MELO3C034080 vs. NCBI nr
Match: TYK05827.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 3.4e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  RVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFRILHE 74
           RVGSSELKRK+G+QREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFF ILHE
Sbjct: 130 RVGSSELKRKKGNQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHE 189

Query: 75  MSELTSSDRALLQRHLLSRMDDMQGFVL 103
           MSELTS DRALLQRHLLSRMDDMQGFVL
Sbjct: 190 MSELTSLDRALLQRHLLSRMDDMQGFVL 217

[Close]

BLAST of MELO3C034080 vs. NCBI nr
Match: KAA0060654.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-31
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           EDVRASR S  SEGRV SS+ KRKRGSQRE E+++IHMVLECTNDQL+ I +W AC L N
Sbjct: 237 EDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLAN 296

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGF 101
           DNHVH+EFF ILHEM ELT  DR+LLQRHLLS M DM+GF
Sbjct: 297 DNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336

[Close]

BLAST of MELO3C034080 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 9.0e-31
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           +DV ASRPSRASEGR  SS  KRKRGSQRE ++E IH+ L+ TN+QL+ I +W ACAL+N
Sbjct: 44  DDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACALVN 103

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGFVL 103
           DNHV  EFFRIL EM ELTS DRALLQRHLLSRMDD++GFVL
Sbjct: 104 DNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVL 145

[Close]

BLAST of MELO3C034080 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           +DVRASRPSRASEGR GSS  KRKRGSQR+ ELE IH+ L+ TN+QLR I +W A  L N
Sbjct: 186 DDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLAN 245

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGFVL 103
           DNHV  EFFRIL EM ELTS DRALLQRHLLSRMDD++GFVL
Sbjct: 246 DNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVL 287

[Close]

BLAST of MELO3C034080 vs. ExPASy TrEMBL
Match: A0A5A7VI32 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32G00060 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.4e-39
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  RVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFRILHE 74
           RVGSSELKRKRG+QREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFF ILHE
Sbjct: 134 RVGSSELKRKRGNQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHE 193

Query: 75  MSELTSSDRALLQRHLLSRMDDMQGFVL 103
           MSELTS DRALLQRHLLSRMDDMQGFVL
Sbjct: 194 MSELTSLDRALLQRHLLSRMDDMQGFVL 221

[Close]

BLAST of MELO3C034080 vs. ExPASy TrEMBL
Match: A0A5D3C1X3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003370 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  RVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFRILHE 74
           RVGSSELKRK+G+QREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFF ILHE
Sbjct: 130 RVGSSELKRKKGNQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHE 189

Query: 75  MSELTSSDRALLQRHLLSRMDDMQGFVL 103
           MSELTS DRALLQRHLLSRMDDMQGFVL
Sbjct: 190 MSELTSLDRALLQRHLLSRMDDMQGFVL 217

[Close]

BLAST of MELO3C034080 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           EDVRASR S  SEGRV SS+ KRKRGSQRE E+++IHMVLECTNDQL+ I +W AC L N
Sbjct: 237 EDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVLECTNDQLKMITEWPACPLAN 296

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGF 101
           DNHVH+EFF ILHEM ELT  DR+LLQRHLLS M DM+GF
Sbjct: 297 DNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336

[Close]

BLAST of MELO3C034080 vs. ExPASy TrEMBL
Match: A0A5D3E168 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00050 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.3e-31
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           +DV ASRPSRASEGR  SS  KRKRGSQRE ++E IH+ L+ TN+QL+ I +W ACAL+N
Sbjct: 44  DDVHASRPSRASEGRTESSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACALVN 103

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGFVL 103
           DNHV  EFFRIL EM ELTS DRALLQRHLLSRMDD++GFVL
Sbjct: 104 DNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVL 145

[Close]

BLAST of MELO3C034080 vs. ExPASy TrEMBL
Match: A0A5D3BT72 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00140 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.7e-31
Identity = 76/102 (74.51%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   EDVRASRPSRASEGRVGSSELKRKRGSQREAELEIIHMVLECTNDQLRTIVDWLACALIN 60
           +DVRASRPSR SEGR GSS  KRKRGSQR+ ELE IH+ L+ TNDQLR I +W A  L N
Sbjct: 159 DDVRASRPSRTSEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNDQLRQIAEWPARNLAN 218

Query: 61  DNHVHREFFRILHEMSELTSSDRALLQRHLLSRMDDMQGFVL 103
           DNHV  EFFRIL EM ELTS DRALLQRHLLSRMDD++GFVL
Sbjct: 219 DNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVL 260

The following BLAST results are available for this feature:

BLAST of MELO3C034080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066016.1	1.5e-38	96.59	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05827.1	3.4e-38	95.45	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060654.1	2.4e-31	74.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon p...	[more]
TYK29656.1	9.0e-31	72.55	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038975.1	1.2e-30	74.51	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VI32	7.4e-39	96.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C1X3	1.6e-38	95.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V026	1.1e-31	74.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E168	4.3e-31	72.55	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BT72	5.7e-31	74.51	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034080.1	MELO3C034080.1	mRNA