MELO3C033906.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033906.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr09: 14316629 .. 14319145 (-)
RNA-Seq ExpressionMELO3C033906.jh1
SyntenyMELO3C033906.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAGCTCTTGAAGAACGATGCGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAGTTAGCTTACTTTCGCATGATTCATGGCTCATACCTTGTCTGTCGCCAAAGTACGAGAATGGACTGAAGATGTTTCGCCATTCTGTGTCACCTACCTGACCATTGCTAGACTAACGTCGACGAAAGTCGTCGATGTTGAAGAGATGGTAGCAATGTTCCTCCACATTCTTGCACATGACGTGAAAAATCGTGTCATTCAATGAGAGTTCATGCGGTCGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCAGTCATTCGACTTCATGAGGAGCTTTTGAAAAAACCACAACCAGTACCTAATGATTGCACATATCAAAGATGGAGGTGGTTTGAAGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTTAATTATGCGTTTCAGAATTGCCTAGGTGCATTACATGGAACGTATATAAAAGTCAACGTTCCAACAAGTGACCGGGCTAGGTATAGAACACGCATGGGGAAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTCGTTTACGTACTTGCCAATTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCTTGATGCCCTTTCAAGACCTAATGGCCTGAAGGTGCCCAGGGGTAACTAACAACGACATTGTACCTATGAATGCAATTTTGCAATTAACAGCTCTGATATTTTAATCGTGCATTGTGATCACAGGCTATTACTACCTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGTGTAGCCTTGAAAATGCACCTTCAACGTCGAAAGAGGTCTTCAATATGAAGCATTCGTATACTCATAATGTAATTGAAAGAGCATTCGGTGTCTTGAAGGGTCAATGGACGATACTGCAGGGAAAGTCATACTACCTTGTAGAAGTTCAATGTCGCACAATACTTGCATGTTGTTTCCTCCACAACCTTATCAATAGGAAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGTCGTCGATGACATACATTACATAGAGACGTCGAATGAGTGGAGTCAATGGAGGGACGACCTTGCAGAAGAAATGTTTACTGATTGGGTGTTGCGTAACCAATAGAAAAATTAAATGTTCCCCGTTCATTTTCATACTTAAGTAGTGATTGCAATAGGTCTTATTTTGTCATAGTTTTTAGAATATGATTGTTTTGAATGTATTGGTTACGCAAGTAACTTACTGCCAAACTGTTTTTCAGTAGTAGTTCACTGTACTATGAAACTAATCATATGTATGTTATCTAATCATACGGAAATTAATGAAACTAATATGTTTGCGTTTGACTTCTAGCATGACAAGTTCATTGAGACTACCTAAACATAGTTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGAGAACGGGACCTTTCGCCCCGGGTACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCTAGGTTGTAATATCCATGCTTCAACCATCGATAGCCGAATAAAATTGATGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAATGTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGGGTAAAGGTGCGTTACTAGTCATTTGAACACTTGTACTATTATTTTAATACATGGACTAACAATTTATTATTGCACTTATACAGAATCATCCGGTGGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGAGCCGAGAGTTTTGCGGACATTGGGTCAAACGATCCTGCTGGGTATGACGCATTTGCCGCTGATGCTGCGCCGGATACGGACTTCCCACCAATGTACAGTCAGGGATTGAACATGTTGCCTAATGATTTGATGGGAACAGGAACCGCTAGGGTCAGTGAATGTAGGTATGTTTCAAGCGGGTCTAAGCGAAAACGTCCAAAACATGCCACAGATAGTAGGGACATAGTTAGTACTGCCATTGAATACGGAAATGAACAACTTCATCGCATTGTTGAATGACCTATCCTACAACGTCAAGACACAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTGGCTTAATGCATATAATTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTTCCGACAATATGAAGTACCCGTACTGTAGCATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTGGAC

mRNA sequence

ATGTTGGAGCTCTTGAAGAACGATGCGAAGAGGATAACGCACATCCCGTATGAAACTAGGCATAGGATTAGACAGTTAGCTTACTTTCGCATGATTCATGGCTCATACCTTGTCTGTCGCCAAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGAGAACGGGACCTTTCGCCCCGGGTACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCTAGGTTGTAATATCCATGCTTCAACCATCGATAGCCGAATAAAATTGATGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAATGTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGGGTAAAGAATCATCCGGTGGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGAGCCGAGAGTTTTGCGGACATTGGGTCAAACGATCCTGCTGGGTATGACGCATTTGCCGCTGATGCTGCGCCGGATACGGACTTCCCACCAATGTACAGTCAGGGATTGAACATGTTGCCTAATGATTTGATGGGAACAGGAACCGCTAGGGTCAGTGAATGTAGGTATGTTTCAAGCGGGTCTAAGCGAAAACGTCCAAAACATGCCACAGATAGTAGGGACATAGTTAGTACTGCCATTGAATACGGAAATGAACAACTTCATCGCATTGTTGAATGACCTATCCTACAACGTCAAGACACAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTGGCTTAATGCATATAATTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTTCCGACAATATGAAGTACCCGTACTGTAGCATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTGGAC

Coding sequence (CDS)

ATGATGGCCTTCAAGATCCTAGGTTGTAATATCCATGCTTCAACCATCGATAGCCGAATAAAATTGATGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAATGTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGGGTAAAGAATCATCCGGTGGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGAGCCGAGAGTTTTGCGGACATTGGGTCAAACGATCCTGCTGGGTATGACGCATTTGCCGCTGATGCTGCGCCGGATACGGACTTCCCACCAATGTACAGTCAGGGATTGAACATGTTGCCTAATGATTTGATGGGAACAGGAACCGCTAGGGTCAGTGAATGTAGGTATGTTTCAAGCGGGTCTAAGCGAAAACGTCCAAAACATGCCACAGATAGTAGGGACATAGTTAGTACTGCCATTGAATACGGAAATGAACAACTTCATCGCATTGTTGAATGA

Protein sequence

MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDWVKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDTDFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQLHRIVE
Homology
[Close]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match: KAA0062276.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26711.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 375 bits (964), Expect = 1.22e-130
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW
Sbjct: 47  MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
             NHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT
Sbjct: 107 --NHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 166

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ
Sbjct: 167 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 226

Query: 181 LHRIVE 186
           LHRIVE
Sbjct: 227 LHRIVE 230

[Close]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (855), Expect = 2.43e-113
Identity = 165/186 (88.71%), Postives = 168/186 (90.32%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIV EKE+FDDW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDA AADA PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSSGSKRKRP HATDS DIV TAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 329 bits (844), Expect = 5.39e-112
Identity = 163/186 (87.63%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL +MR P CSGFGWNDEKKCI+AEKEVFDDW
Sbjct: 1   MMAFKIPGCNIHASTIDSRIKLMKRMFHALADMRDPNCSGFGWNDEKKCIIAEKEVFDDW 60

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAAD   DT
Sbjct: 61  VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLDT 120

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSSGSK KRP HATDS DIV TAIEYGNEQ
Sbjct: 121 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQ 180

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 181 LHRIAE 186

[Close]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 329 bits (843), Expect = 1.63e-111
Identity = 162/186 (87.10%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIV EKE+FDDW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP+AKGLLNKSFVHYDELSYVFGKDRATGGRAESF DIGSNDPAGYDAFAADAAPDT
Sbjct: 111 VKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDT 170

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           +F PMYS GLNM P+DLM T T RVSE R VSSGSKRKRP H TDS DIV TAIEY NEQ
Sbjct: 171 NFSPMYSSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQ 230

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (838), Expect = 1.99e-110
Identity = 164/186 (88.17%), Postives = 166/186 (89.25%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MM FKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIVAEKEVFDDW
Sbjct: 47  MMTFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
             +HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDAFAADA PDT
Sbjct: 107 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDT 166

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSS SKRKRP HATDS DIV TAIEYGNEQ
Sbjct: 167 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQ 226

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 227 LHRIAE 230

[Close]
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DSH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003730 PE=4 SV=1)

HSP 1 Score: 375 bits (964), Expect = 5.89e-131
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW
Sbjct: 47  MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
             NHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT
Sbjct: 107 --NHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 166

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ
Sbjct: 167 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 226

Query: 181 LHRIVE 186
           LHRIVE
Sbjct: 227 LHRIVE 230

[Close]
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 333 bits (855), Expect = 1.18e-113
Identity = 165/186 (88.71%), Postives = 168/186 (90.32%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIV EKE+FDDW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDA AADA PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSSGSKRKRP HATDS DIV TAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 2.61e-112
Identity = 163/186 (87.63%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL +MR P CSGFGWNDEKKCI+AEKEVFDDW
Sbjct: 1   MMAFKIPGCNIHASTIDSRIKLMKRMFHALADMRDPNCSGFGWNDEKKCIIAEKEVFDDW 60

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAAD   DT
Sbjct: 61  VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLDT 120

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSSGSK KRP HATDS DIV TAIEYGNEQ
Sbjct: 121 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQ 180

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 181 LHRIAE 186

[Close]
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 329 bits (843), Expect = 7.90e-112
Identity = 162/186 (87.10%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MMAFKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIV EKE+FDDW
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
           VK+HP+AKGLLNKSFVHYDELSYVFGKDRATGGRAESF DIGSNDPAGYDAFAADAAPDT
Sbjct: 111 VKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDT 170

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           +F PMYS GLNM P+DLM T T RVSE R VSSGSKRKRP H TDS DIV TAIEY NEQ
Sbjct: 171 NFSPMYSSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQ 230

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 327 bits (838), Expect = 9.63e-111
Identity = 164/186 (88.17%), Postives = 166/186 (89.25%), Query Frame = 0 

Query: 1   MMAFKILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDW 60
           MM FKI GCNIHASTIDSRIKLMKRMFHAL EMRGP CSGFGWNDEKKCIVAEKEVFDDW
Sbjct: 47  MMTFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADAAPDT 120
             +HP AKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDAFAADA PDT
Sbjct: 107 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDT 166

Query: 121 DFPPMYSQGLNMLPNDLMGTGTARVSECRYVSSGSKRKRPKHATDSRDIVSTAIEYGNEQ 180
           DFPPMYS GLNM P+DLM T TARVSE R VSS SKRKRP HATDS DIV TAIEYGNEQ
Sbjct: 167 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQ 226

Query: 181 LHRIVE 186
           LHRI E
Sbjct: 227 LHRIAE 230

[Close]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 6.2e-12
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 0 

Query: 5   KILGCNIHASTIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEKEVFDDWVKNH 64
           K LGCN +     SR+K +K ++ +  +++    SGFGW+ E K   A  EV+ D++K H
Sbjct: 55  KRLGCNKNHKNYMSRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAH 114

Query: 65  PVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD 101
           P  K +  +S  H+++L  +FG   ATG  A   +D
Sbjct: 115 PNHKHMQTESIDHFEDLQIIFGDVVATGSFAVGMSD 149

[Close]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-05
Identity = 25/106 (23.58%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 3   AFKILGCNIHA--------STIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEK 62
           A+K + C+  A          + +R K ++ +F ++  +   +  GF W+D ++ +VA+ 
Sbjct: 45  AWKFMSCSFTAKFKFLYGKDVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADN 104

Query: 63  EVFDDWVKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD 101
            V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Sbjct: 105 CVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESISE 148

[Close]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-05
Identity = 25/106 (23.58%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 3   AFKILGCNIHA--------STIDSRIKLMKRMFHALTEMRGPMCSGFGWNDEKKCIVAEK 62
           A+K + C+  A          + +R K ++ +F ++  +   +  GF W+D ++ +VA+ 
Sbjct: 45  AWKFMSCSFTAKFKFLYGKDVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADN 104

Query: 63  EVFDDWVKNHPVAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD 101
            V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Sbjct: 105 CVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESISE 148

[Close]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 6.2e-04
Identity = 23/89 (25.84%), Postives = 41/89 (46.07%), Query Frame = 0 

Query: 40  GFGWNDEKKCIVAEKEVFDDWVKNHPVAKGLLNKSFVHYDELSYVF------GKDRATGG 99
           GF W++ +  I A+  V+D ++K+HP+A+    KS   Y++L  +F      G D    G
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 100 RAESFADIGSNDPAGYDAFAADAAPDTDF 123
            A   ++  ++     D       P  D+
Sbjct: 305 SAAQTSETKASQEQNSDRTRIFWTPPMDY 333

[Close]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 6.2e-04
Identity = 23/89 (25.84%), Postives = 41/89 (46.07%), Query Frame = 0 

Query: 40  GFGWNDEKKCIVAEKEVFDDWVKNHPVAKGLLNKSFVHYDELSYVF------GKDRATGG 99
           GF W++ +  I A+  V+D ++K+HP+A+    KS   Y++L  +F      G D    G
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 100 RAESFADIGSNDPAGYDAFAADAAPDTDF 123
            A   ++  ++     D       P  D+
Sbjct: 305 SAAQTSETKASQEQNSDRTRIFWTPPMDY 333

The following BLAST results are available for this feature:
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062276.11.22e-13098.92retrotransposon protein [Cucumis melo var. makuwa] >TYK26711.1 retrotransposon p... [more]
TYK05082.12.43e-11388.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050782.15.39e-11287.63retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047075.11.63e-11187.10retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065737.11.99e-11088.17retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033906.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033906.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSH65.89e-13198.92Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1M01.18e-11388.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4M22.61e-11287.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0987.90e-11287.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VF539.63e-11188.17Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C033906.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30140.16.2e-1235.42unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.13.3e-0523.58unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.23.3e-0523.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.16.2e-0425.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.26.2e-0425.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033906.jh1.t1MELO3C033906.jh1.t1mRNA