MELO3C033878 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033878
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr09: 11057260 .. 11058702 (+)
RNA-Seq Expression	MELO3C033878
Synteny	MELO3C033878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATTCAAAAAGAGTGGGCAAGGGATGGCTGTAATATACAAGAATCCAATTTAATTTGGAAAAAGAAGATTGCATAAACTTGAGATAAAGAATTGAAACACACACCAAACCTCTATTCCTCCTCTCTTGCAATTTTGTCATTACCACCACCATGTTCTCTATCAAGATTGATGACATTTATCCTTTCCTAGAGACAACCATCCTATTTGTTGAACTTACACACAAGGAAATCTGCCTTAAATTTTTGCAGTCGACGTTGTCGATAATTGTTCGGTACCAAAGTCCTATTTTCATTGTAATGATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTAAGTATACATATACGTATATTATAATACCCTTTTTCTTCGTTTCTTTTATTAAAAAATGAATCTTGGTTCTCAATAGAGATTATTATTTTTTCTATATTTCTTGATTCCTTCATACATTCTAAGAATTTGTTTATGAACATGCATGTTTGGACATTATGTGGATTTTTGTTTTCATAAAATATGAATCTTGTTTAAATAATTTTCATGTTTAGATCATTAGAAATCGATTCTTGCAACTTCTTTAGTTAAAAAGTTCATCATATATCAAATAATTGAGCATATTCTATACTTCAATCTTGCTTATTTTTTTTTTTAAAAATTAATATTTAATTCATTAAAAGTATCATTGCAGTCTTTATATTTTGAATTTCATTACATTTTAATTAGTCGTTGTTGAACTCTCACTAAATCTCAAATTAAGTTGGTGTCATTAAATTTGTTGATTATTGTATTTGTATTCATATGATATGAATTATTATTATTAATTATTAGTTAATCAATTTTGATAAAAAAAAATGAAATTCAAATGTCAGTTCATATGCAAATTATAATTATTACAAGTAATAAATAACCTTCTCATCTTTTGACTATATTAATATCAATCTTTAAGGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAAGTAATGCAATTCTTTTTCCATATATTTTACTTTTAACAAAAGTGGTTAATTTAATAATATATATATATATATATATATATATATATTCCTAAAACCATTTTATTTTGTACAGTTTTGATTACTGCATTTGGTTCAAAAGTCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGGTATGTT

mRNA sequence

AGTAATTCAAAAAGAGTGGGCAAGGGATGGCTGTAATATACAAGAATCCAATTTAATTTGGAAAAAGAAGATTGCATAAACTTGAGATAAAGAATTGAAACACACACCAAACCTCTATTCCTCCTCTCTTGCAATTTTGTCATTACCACCACCATGTTCTCTATCAAGATTGATGACATTTATCCTTTCCTAGAGACAACCATCCTATTTGTTGAACTTACACACAAGGAAATCTGCCTTAAATTTTTGCAGTCGACGTTGTCGATAATTGTTCGGTACCAAAGTCCTATTTTCATTGTAATGATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAATTTTGATTACTGCATTTGGTTCAAAAGTCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGGTATGTT

Coding sequence (CDS)

ATGTTCTCTATCAAGATTGATGACATTTATCCTTTCCTAGAGACAACCATCCTATTTGTTGAACTTACACACAAGGAAATCTGCCTTAAATTTTTGCAGTCGACGTTGTCGATAATTGTTCGGTACCAAAGTCCTATTTTCATTGTAATGATGTCTATGCCGCAACCGTTATTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAATTGTTTCCCTTCCGCCCTTGCACAATGCTTTGGTTGATGGCGAAACTTTTGCTACACTGAACATCTCTATTGAGGAAGAGCAGAATAAAATATTTCTTACATTTGAGGCTTCAAGTCCTTCAACATTACCATTGAATCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTCCTGGACCAGTTAAATTTGATGGAAAAATTTTCTCTATTGAGTCAGAACTGTTTACCGATATTATCCAACTATTTTCTGCCTTCAATGAAGCTGATGCAATTTTGATTACTGCATTTGGTTCAAAAGTCACCTTCTCAGTTCCTCCATTTGCAGAGACACCTCTTACCGAAGAGGTATGT

Protein sequence

MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSKVTFSVPPFAETPLTEEVC

Homology

[Close]

BLAST of MELO3C033878 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 8.1e-70
Identity = 139/186 (74.73%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60
           MFSIKIDDI PFL+ TILF ELTH EICLKFL ST+SIIVRY+ PIF V MS+PQPLF E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTF 120
           YSVDRNHIS +SL   ++AL++ +TFA LNI ++E+QNKI LTFE SSPSTLPLNRELTF
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPSTLPLNRELTF 120

Query: 121 VVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSKVTFSVPPFAE 180
           VVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FGSKV+FS+ PFAE
Sbjct: 121 VVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSKVSFSILPFAE 180

Query: 181 TPLTEE 187
           TPLTEE
Sbjct: 181 TPLTEE 186

[Close]

BLAST of MELO3C033878 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-69
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 50  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 109
           MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 169
           STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 KVTFSVPPFAETPLTEEV 188
           KVTFSVPPFAETPLTEE+
Sbjct: 121 KVTFSVPPFAETPLTEEI 138

[Close]

BLAST of MELO3C033878 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 50  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 109
           MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 169
           STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 KVTFSVPPFAETPLTEE 187
           KVTFSVPPFAETPLTEE
Sbjct: 121 KVTFSVPPFAETPLTEE 137

[Close]

BLAST of MELO3C033878 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.8e-38
Identity = 87/160 (54.37%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60
           MFSIKID + P L+   LF ++ + +ICLKF  ST SII RYQ P F  M+ +P+PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTF 120
           Y V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 VVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEAD 161
            VPMEDWS G + FD K FSIES+LF DII  F  +NE D
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVD 160

[Close]

BLAST of MELO3C033878 vs. NCBI nr
Match: KAE8652085.1 (hypothetical protein Csa_018729, partial [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-26
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 109 PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFG 168
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FG
Sbjct: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60

Query: 169 SKVTFSVPPFAETPLTEE 187
           SKV+FS+ PFAETPLTEE
Sbjct: 61  SKVSFSILPFAETPLTEE 78

[Close]

BLAST of MELO3C033878 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 8.7e-70
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 50  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 109
           MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 169
           STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 KVTFSVPPFAETPLTEEV 188
           KVTFSVPPFAETPLTEE+
Sbjct: 121 KVTFSVPPFAETPLTEEI 138

[Close]

BLAST of MELO3C033878 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 50  MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 109
           MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 169
           STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 KVTFSVPPFAETPLTEE 187
           KVTFSVPPFAETPLTEE
Sbjct: 121 KVTFSVPPFAETPLTEE 137

[Close]

BLAST of MELO3C033878 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38
Identity = 87/160 (54.37%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60
           MFSIKID + P L+   LF ++ + +ICLKF  ST SII RYQ P F  M+ +P+PLFAE
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTF 120
           Y V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 VVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEAD 161
            VPMEDWS G + FD K FSIES+LF DII  F  +NE D
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVD 160

[Close]

BLAST of MELO3C033878 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60
           MFSIK+D++ PFL+ T LF E  + EICLKF  ST S+I RYQ P F  M+ MP PLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNR--EL 120
           YSVDRNHIS +SL    NAL++G+++++++I + E QN I   FE   PS L  +R  ++
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE---PSILITSRGSQI 120

Query: 121 TF-VVPMED 127
           TF  VP E+
Sbjct: 121 TFSAVPREE 126

[Close]

BLAST of MELO3C033878 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 61/186 (32.80%), Postives = 103/186 (55.38%), Query Frame = 0


Query: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60
           MF ++++   P ++ T L  ++  K+  +KF    L IIV  +SP F+  + + + LF  
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVA-KDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNRELTF 120
           +SVD N  S VSL P H+A++DG +F+++ I + +  N++ L FE  S    PL+ EL  
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 VVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGSKVTFSVPPFAE 180
             P  + + G V++ G  F++ S     II+    F++ D + +T  GS+V FS+    E
Sbjct: 121 SPPQAE-NLGQVEY-GNFFTVTSRELRRIIKELPLFHQ-DTVSVTVTGSQVKFSIQS-KE 180

Query: 181 TPLTEE 187
             LT+E
Sbjct: 181 IILTKE 181

The following BLAST results are available for this feature:

BLAST of MELO3C033878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736681.1	8.1e-70	74.73	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KAA0047513.1	1.8e-69	99.28	hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]	[more]
TYK26483.1	4.0e-69	100.00	hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]	[more]
KGN45637.1	4.8e-38	54.38	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
KAE8652085.1	7.2e-26	79.49	hypothetical protein Csa_018729, partial [Cucumis sativus]	[more]

BLAST of MELO3C033878 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVD7	8.7e-70	99.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DSC2	1.9e-69	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KB76	2.3e-38	54.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0LIE0	1.6e-23	51.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A1S3C8J1	4.7e-15	32.80	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]

BLAST of MELO3C033878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..177 e-value: 6.8E-12 score: 47.2
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 14..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033878.1	MELO3C033878.1	mRNA