MELO3C033796 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033796
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr05: 21683314 .. 21683554 (-)
RNA-Seq Expression	MELO3C033796
Synteny	MELO3C033796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAGCCATCCCCACCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGC

mRNA sequence

ATATAGCCATCCCCACCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGC

Coding sequence (CDS)

ATAGCCATCCCCACCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCATCGAGAAATAG

Protein sequence

IAIPTPHVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPIEK

Homology

[Close]

BLAST of MELO3C033796 vs. NCBI nr
Match: KAF4360038.1 (hypothetical protein G4B88_025799, partial [Cannabis sativa])

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   IAIPTPHVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRR 51
           IAIPTP       L        GEQVKIEKLTLGLGIIRLELMTS TSR+
Sbjct: 55  IAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSRQ 104

[Close]

BLAST of MELO3C033796 vs. NCBI nr
Match: KAF4359988.1 (hypothetical protein F8388_004495 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 33/49 (67.35%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1  IAIPTPHVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSR 50
          IAIPTP       L        GEQVKIEKLTLGLGIIRLELMTS TSR
Sbjct: 46 IAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSR 94

[Close]

BLAST of MELO3C033796 vs. NCBI nr
Match: KAG9438526.1 (hypothetical protein H6P81_021526 [Aristolochia fimbriata])

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 23  GEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPIE 65
           GEQVKIEKLTLGLGIIRLELMTS TSR  S    +  P P E
Sbjct: 216 GEQVKIEKLTLGLGIIRLELMTSTTSRLTSLLLSWYNPIPAE 257

[Close]

BLAST of MELO3C033796 vs. ExPASy TrEMBL
Match: A0A6N2KRR2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   IAIPTP-HVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRRHSTA 55
           IAIPTP   +   L+     +  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Sbjct: 259 IAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTTSRQRFTS 313

[Close]

BLAST of MELO3C033796 vs. ExPASy TrEMBL
Match: A0A6N2K9N9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   IAIPTP-HVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRRHSTA 55
           IAIPTP   +   L+     +  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Sbjct: 268 IAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTTSRQRFTS 322

[Close]

BLAST of MELO3C033796 vs. ExPASy TrEMBL
Match: A0A6N2M1J4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304386 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   IAIPTP-HVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRRHSTA 55
           IAIPTP   +   L+     +  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Sbjct: 123 IAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTTSRQRFTS 177

[Close]

BLAST of MELO3C033796 vs. ExPASy TrEMBL
Match: A0A6N2LAQ4 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS200687 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 1   IAIPTP-HVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRRHSTA 55
           IAIPTP   +   L+     +  GEQVKIEKLTLGLGIIRLELMTS TSR+  T+
Sbjct: 164 IAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLELMTSTTSRQRFTS 218

[Close]

BLAST of MELO3C033796 vs. ExPASy TrEMBL
Match: A0A7J6ENQ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_025799 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   IAIPTPHVNPTSLLSILIRSRRGEQVKIEKLTLGLGIIRLELMTSATSRR 51
           IAIPTP       L        GEQVKIEKLTLGLGIIRLELMTS TSR+
Sbjct: 55  IAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSRQ 104

The following BLAST results are available for this feature:

BLAST of MELO3C033796 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4360038.1	2.7e-04	66.00	hypothetical protein G4B88_025799, partial [Cannabis sativa]	[more]
KAF4359988.1	3.5e-04	67.35	hypothetical protein F8388_004495 [Cannabis sativa]	[more]
KAG9438526.1	4.6e-04	71.43	hypothetical protein H6P81_021526 [Aristolochia fimbriata]	[more]

BLAST of MELO3C033796 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KRR2	4.4e-05	61.82	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1	[more]
A0A6N2K9N9	4.4e-05	61.82	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1	[more]
A0A6N2M1J4	4.4e-05	61.82	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304386 PE=3 SV=...	[more]
A0A6N2LAQ4	4.4e-05	61.82	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2006...	[more]
A0A7J6ENQ3	1.3e-04	66.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_025799 PE=4 SV=1	[more]

BLAST of MELO3C033796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033796.1	MELO3C033796.1	mRNA