MELO3C033795.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033795.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr09: 6882156 .. 6883523 (-)
RNA-Seq Expression	MELO3C033795.jh1
Synteny	MELO3C033795.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCTTTGATATAGTGGACGACATAGATGAGGTTGATTCCACCCACGCGACTAGTGCCGTCGATGACATACATTACATAGAGACATCCAATGAGTAGACTCGGTGGAGGGACGACCTTGCTAAAGAAATGTTTAGTGAATGGTAGTCGCGTAACCAGTAAAACAATTAAATATTCACCGTTCATTTTCATACTTAAGTAGTGCTTGTACTGAGTCTTATTTTGTCATAGTTTTCAGAATATATTTGTATTTAATGTATTGATTACGTAAGTAAATTAATGGCAAATTGTTATTCAGTACGACTTGAATGTACTATGTATGTAATTGTAGGAAATTTATGAAACTGATATGTTTGCGTTTCATTTCTAGCATGAAAAGTTCATCGGGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGACCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGGTGGAGGTCTGACAACGGGGCGTTTTGGCCTGGGTACCTAAATCAGCTGGCAAGAATGATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGAGCAATTAATGTAGTATATTTAAAAAAATGGACTAACAATTTATTATTGCACCTATATAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGGTAAGTATATTTCGAGCGGGTCTAAGCGGAAACGTGAAGGATAGGCTGCAGATAGTGGGGACGTACTTCACACTGCGATTGAGTATAGAAATGAATAACTGAATCACATTGTTGAATGGCCTGTCCTACAACGTCAAGATGCAAGTCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTGAGCTGACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTATCCGTACTGCAGCACCATTCTTCAAGAAAACCGATGA

mRNA sequence

ATGACAACCTTTGATATAGTGGACGACATAGATGAGGTTGATTCCACCCACGCGACTAGTGCCGTCGATGACATACATTACATAGAGACATCCAATGACATGAAAAGTTCATCGGGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGACCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGGTGGAGGTCTGACAACGGGGCGTTTTGGCCTGGGTACCTAAATCAGCTGGCAAGAATGATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGATGCAAGTCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTGAGCTGACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTATCCGTACTGCAGCACCATTCTTCAAGAAAACCGATGA

Coding sequence (CDS)

ATGACAACCTTTGATATAGTGGACGACATAGATGAGGTTGATTCCACCCACGCGACTAGTGCCGTCGATGACATACATTACATAGAGACATCCAATGACATGAAAAGTTCATCGGGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGACCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGGTGGAGGTCTGACAACGGGGCGTTTTGGCCTGGGTACCTAAATCAGCTGGCAAGAATGATGACCTTCAAAATCCAAGGTTCTAATGTCCATGTTTCAACGATCGATAGCCGAATAAAATTATTGAAGAGAATGTTCCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGTCGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCCGACGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGTACATGTTTGGAAAAGATCGTGCAATGGGAGGTCGGCCCAAGAGTTTTACGGACGTTGGGTCAAACGATCTTGTTAGGTACGAGGCATTTACCGCTGACGCTGCATCGGATACGAACTTCCAGCCTATGTACAGTCAAGGATTGAGCATGTCGCTTGATGAACTGATGGGAACAAGAACCGCTCTAGTAAGTGAAGATGCAAGTCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTGAGCTGACATTGATGGATAGGTGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTATCCGTACTGCAGCACCATTCTTCAAGAAAACCGATGA

Protein sequence

MTTFDIVDDIDEVDSTHATSAVDDIHYIETSNDMKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR

Homology

[Close]

BLAST of MELO3C033795.jh1 vs. NCBI nr
Match: TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 533 bits (1372), Expect = 1.51e-190
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN
Sbjct: 1   MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL
Sbjct: 61  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL
Sbjct: 121 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 180

Query: 214 SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE 273
           SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE
Sbjct: 181 SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE 240

Query: 274 VPDNMKYPYCSTILQENR 291
           VPDNMKYPYCSTILQENR
Sbjct: 241 VPDNMKYPYCSTILQENR 258

[Close]

BLAST of MELO3C033795.jh1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 449 bits (1154), Expect = 1.69e-151
Identity = 236/349 (67.62%), Postives = 254/349 (72.78%), Query Frame = 0


Query: 1   MTTFDIVDDIDEVDSTHATSAVDDIHYIETSND------------MKSSSGLPKHNWTKE 60
           MT FDI D+IDEVDSTHAT+A DDIHYIETSN+            M SSS LPKH WTKE
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRLPKHTWTKE 370

Query: 61  EEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSNVHVSTIDSRIKLLKR 120
           EEA LVECLVELVNAGGWRSDNG F PGYLNQLARMM FKI GSN+H STIDSRIKL+KR
Sbjct: 371 EEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKR 430

Query: 121 MFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMF 180
           MFHA+AEMRGP CSGFGWNDE+KCIV EKEVFDDW  SHP AKGLLNKSF HYDELSY+F
Sbjct: 431 MFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVF 490

Query: 181 GKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALV 240
           GKDRA GGR +SF D+GSND   Y+A  ADA  DT+F PMYS GL+MS D+LM TRTA V
Sbjct: 491 GKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARV 550

Query: 241 SE----------------------------------------------DASQTRQEVVRQ 291
           SE                                              DA+QTRQE+VR 
Sbjct: 551 SERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRH 610

[Close]

BLAST of MELO3C033795.jh1 vs. NCBI nr
Match: KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 426 bits (1094), Expect = 6.57e-148
Identity = 213/276 (77.17%), Postives = 226/276 (81.88%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKHNWTKEEEA  VECL+ELVNA  WR DN  F PGYLNQLARMMTFKI  SN
Sbjct: 1   MASSSRLPKHNWTKEEEAGFVECLMELVNADRWRFDNETFRPGYLNQLARMMTFKIPSSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDWVKSHP AKGL
Sbjct: 61  VHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWVKSHPVAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL  YEAF ADA SDT+FQ MYSQGL
Sbjct: 121 LNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTDFQLMYSQGL 180

Query: 214 SMSLDELMGTRTALVSE------------------DASQTRQEVVRQLEVIPELTLMDRC 273
           +MSLDELM TRT  VSE                  +ASQTRQ+VVRQLE IPELTLMDRC
Sbjct: 181 NMSLDELMETRTPRVSEGRYVSSGSKRKRGGQAADNASQTRQKVVRQLEAIPELTLMDRC 240

Query: 274 HLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
           HLMRILMRNVD+MKAFL+VPDNMKYPYC+ ILQENR
Sbjct: 241 HLMRILMRNVDNMKAFLDVPDNMKYPYCNIILQENR 276

[Close]

BLAST of MELO3C033795.jh1 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 424 bits (1089), Expect = 3.79e-147
Identity = 216/276 (78.26%), Postives = 224/276 (81.16%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKHNWTKEEEA LVECLVELVNAGGWRSDNG F P YLNQLARMM FKI GSN
Sbjct: 1   MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+WVKSH  AKGL
Sbjct: 61  VHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           L K F HYDELSY+FGKDRA GG  +SF DVGSN+L  YE F A+A  DTNFQPMYSQ L
Sbjct: 121 LTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQEL 180

Query: 214 SMSLDELMGTRTALVSE------------------DASQTRQEVVRQLEVIPELTLMDRC 273
           +MS DELMGTR A VSE                  +ASQTRQEVVRQLE IPELT MDRC
Sbjct: 181 NMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDRC 240

Query: 274 HLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
            LM ILMRNV+DMKAFLEVPDNMKYPYCS ILQENR
Sbjct: 241 PLMPILMRNVNDMKAFLEVPDNMKYPYCSIILQENR 276

[Close]

BLAST of MELO3C033795.jh1 vs. NCBI nr
Match: KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 415 bits (1067), Expect = 9.76e-144
Identity = 206/282 (73.05%), Postives = 222/282 (78.72%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKH WTKEEE  LVECLVELVNAGGWRSDNG F PGYLNQLARMM FKI G N
Sbjct: 1   MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           +H STIDSRIKL+KRMFHA+AEMRGP CSGFGWNDE+KCI+ EKEVFDDW  SHP AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNKSF HYDELSY+FGKD A GGR +SFTD+GSND   Y+AF ADA  DT+F PMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGL 180

Query: 214 SMSLDELMGTRTA------------------------LVSEDASQTRQEVVRQLEVIPEL 273
           +MS D+LM TRTA                        L  +DA+QTRQE+VRQLE IPEL
Sbjct: 181 NMSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPEL 240

Query: 274 TLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
           TLMDRC LMRI+MRNVDDMKAFLEVPDNM YPYCS ILQENR
Sbjct: 241 TLMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQENR 280

[Close]

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 533 bits (1372), Expect = 7.33e-191
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN
Sbjct: 1   MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL
Sbjct: 61  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL
Sbjct: 121 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 180

Query: 214 SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE 273
           SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE
Sbjct: 181 SMSLDELMGTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLE 240

Query: 274 VPDNMKYPYCSTILQENR 291
           VPDNMKYPYCSTILQENR
Sbjct: 241 VPDNMKYPYCSTILQENR 258

[Close]

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 449 bits (1154), Expect = 8.20e-152
Identity = 236/349 (67.62%), Postives = 254/349 (72.78%), Query Frame = 0


Query: 1   MTTFDIVDDIDEVDSTHATSAVDDIHYIETSND------------MKSSSGLPKHNWTKE 60
           MT FDI D+IDEVDSTHAT+A DDIHYIETSN+            M SSS LPKH WTKE
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEIMTSSSRLPKHTWTKE 370

Query: 61  EEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSNVHVSTIDSRIKLLKR 120
           EEA LVECLVELVNAGGWRSDNG F PGYLNQLARMM FKI GSN+H STIDSRIKL+KR
Sbjct: 371 EEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKR 430

Query: 121 MFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMF 180
           MFHA+AEMRGP CSGFGWNDE+KCIV EKEVFDDW  SHP AKGLLNKSF HYDELSY+F
Sbjct: 431 MFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVF 490

Query: 181 GKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALV 240
           GKDRA GGR +SF D+GSND   Y+A  ADA  DT+F PMYS GL+MS D+LM TRTA V
Sbjct: 491 GKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARV 550

Query: 241 SE----------------------------------------------DASQTRQEVVRQ 291
           SE                                              DA+QTRQE+VR 
Sbjct: 551 SERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRH 610

[Close]

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)

HSP 1 Score: 426 bits (1094), Expect = 3.18e-148
Identity = 213/276 (77.17%), Postives = 226/276 (81.88%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKHNWTKEEEA  VECL+ELVNA  WR DN  F PGYLNQLARMMTFKI  SN
Sbjct: 1   MASSSRLPKHNWTKEEEAGFVECLMELVNADRWRFDNETFRPGYLNQLARMMTFKIPSSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VH S IDSRIKLLKRMFHA+AEMRGPTC GFGWNDEQKCIV EKEVFDDWVKSHP AKGL
Sbjct: 61  VHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWVKSHPVAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNK FPHYDEL Y+FGKDR M GR ++FT+VGSNDL  YEAF ADA SDT+FQ MYSQGL
Sbjct: 121 LNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTDFQLMYSQGL 180

Query: 214 SMSLDELMGTRTALVSE------------------DASQTRQEVVRQLEVIPELTLMDRC 273
           +MSLDELM TRT  VSE                  +ASQTRQ+VVRQLE IPELTLMDRC
Sbjct: 181 NMSLDELMETRTPRVSEGRYVSSGSKRKRGGQAADNASQTRQKVVRQLEAIPELTLMDRC 240

Query: 274 HLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
           HLMRILMRNVD+MKAFL+VPDNMKYPYC+ ILQENR
Sbjct: 241 HLMRILMRNVDNMKAFLDVPDNMKYPYCNIILQENR 276

[Close]

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 424 bits (1089), Expect = 1.84e-147
Identity = 216/276 (78.26%), Postives = 224/276 (81.16%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKHNWTKEEEA LVECLVELVNAGGWRSDNG F P YLNQLARMM FKI GSN
Sbjct: 1   MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           VH STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIV EKEVFD+WVKSH  AKGL
Sbjct: 61  VHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           L K F HYDELSY+FGKDRA GG  +SF DVGSN+L  YE F A+A  DTNFQPMYSQ L
Sbjct: 121 LTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQEL 180

Query: 214 SMSLDELMGTRTALVSE------------------DASQTRQEVVRQLEVIPELTLMDRC 273
           +MS DELMGTR A VSE                  +ASQTRQEVVRQLE IPELT MDRC
Sbjct: 181 NMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDRC 240

Query: 274 HLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
            LM ILMRNV+DMKAFLEVPDNMKYPYCS ILQENR
Sbjct: 241 PLMPILMRNVNDMKAFLEVPDNMKYPYCSIILQENR 276

[Close]

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 4.72e-144
Identity = 206/282 (73.05%), Postives = 222/282 (78.72%), Query Frame = 0


Query: 34  MKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSN 93
           M SSS LPKH WTKEEE  LVECLVELVNAGGWRSDNG F PGYLNQLARMM FKI G N
Sbjct: 1   MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 94  VHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGL 153
           +H STIDSRIKL+KRMFHA+AEMRGP CSGFGWNDE+KCI+ EKEVFDDW  SHP AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKGL 120

Query: 154 LNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGL 213
           LNKSF HYDELSY+FGKD A GGR +SFTD+GSND   Y+AF ADA  DT+F PMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGL 180

Query: 214 SMSLDELMGTRTA------------------------LVSEDASQTRQEVVRQLEVIPEL 273
           +MS D+LM TRTA                        L  +DA+QTRQE+VRQLE IPEL
Sbjct: 181 NMSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPEL 240

Query: 274 TLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQENR 291
           TLMDRC LMRI+MRNVDDMKAFLEVPDNM YPYCS ILQENR
Sbjct: 241 TLMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQENR 280

[Close]

BLAST of MELO3C033795.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-10
Identity = 41/178 (23.03%), Postives = 83/178 (46.63%), Query Frame = 0


Query: 1   MTTFDIVDDIDEVDSTHATSAVDD---IHYIETSNDMKSSSGLPKHNWTKEEEADLVECL 60
           + +++ +D I    +   T   DD       ET    + +S   +  WT   +  L++ L
Sbjct: 280 LPSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKASQEQNSDRTRIFWTPPMDYHLIDLL 339

Query: 61  VELVNAGGWRSDNGAFWPGYLNQLARMMTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMR 120
           VE VN G        F     N++      K  GS  +   + +R K L+R+++ I  + 
Sbjct: 340 VEQVNNG--NRVGQTFITSAWNEMVTAFNAKF-GSQHNKDVLKNRYKHLRRLYNDIKFLL 399

Query: 121 GPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGKDRAMG 176
               +GF W+  +  ++ + ++++ ++++HP A+    K+ P Y  L ++FGK+ + G
Sbjct: 400 EQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

[Close]

BLAST of MELO3C033795.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-08
Identity = 36/150 (24.00%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 45  WTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFK---IQGSNVHVSTIDS 104
           WT E +   +E +VE V  G  R ++  F       ++   T K   + G +V    + +
Sbjct: 14  WTPEMDQYFIELMVEQVRKGN-RFEDHLFSKRAWKFMSCSFTAKFKFLYGKDV----LKN 73

Query: 105 RIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHY 164
           R K L+ +F ++  +      GF W+D ++ +V +  V+D+++K HP ++    KS P Y
Sbjct: 74  RHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCY 133

Query: 165 DELSYMFGKDRAMGGRPKSFTDVGSNDLVR 192
            +L  ++    +     +S ++  S  L++
Sbjct: 134 KDLCLVYSDGMSEHKAEESISEGESKTLIQ 156

[Close]

BLAST of MELO3C033795.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-08
Identity = 36/150 (24.00%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 45  WTKEEEADLVECLVELVNAGGWRSDNGAFWPGYLNQLARMMTFK---IQGSNVHVSTIDS 104
           WT E +   +E +VE V  G  R ++  F       ++   T K   + G +V    + +
Sbjct: 14  WTPEMDQYFIELMVEQVRKGN-RFEDHLFSKRAWKFMSCSFTAKFKFLYGKDV----LKN 73

Query: 105 RIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHY 164
           R K L+ +F ++  +      GF W+D ++ +V +  V+D+++K HP ++    KS P Y
Sbjct: 74  RHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCY 133

Query: 165 DELSYMFGKDRAMGGRPKSFTDVGSNDLVR 192
            +L  ++    +     +S ++  S  L++
Sbjct: 134 KDLCLVYSDGMSEHKAEESISEGESKTLIQ 156

[Close]

BLAST of MELO3C033795.jh1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06
Identity = 42/163 (25.77%), Postives = 68/163 (41.72%), Query Frame = 0


Query: 15  STHATSAVDDIHYIETSNDMKSSSGLPKHNWTKEEEADLVECLVELVNAGGWRSDNGAFW 74
           S+H     D+I+        K SS   K  WT E +   VE +V+ +  G  ++ N    
Sbjct: 145 SSHDLEIEDEINGESVVLSGKESS---KTEWTLEMDQYFVEIMVDQIGRGN-KTGNAFSK 204

Query: 75  PGYLNQLARM-MTFKIQ-GSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKC 134
             +++ L      F  Q G  V     +  +K  K M   + E       GF W++ +  
Sbjct: 205 QAWIDMLVLFNARFSGQYGKRVLRHRYNKLLKYYKDMEAILKE------DGFSWDETRLM 264

Query: 135 IVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGKDRAMG 176
           I  +  V+D ++K HP A+    KS P Y++L  +F      G
Sbjct: 265 ISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQG 297

The following BLAST results are available for this feature:

BLAST of MELO3C033795.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05687.1	1.51e-190	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	1.69e-151	67.62	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0037854.1	6.57e-148	77.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p...	[more]
KAA0054347.1	3.79e-147	78.26	retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p...	[more]
KAA0047509.1	9.76e-144	73.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033795.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033795.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1J4	7.33e-191	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	8.20e-152	67.62	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5D3CHG6	3.18e-148	77.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UIE9	1.84e-147	78.26	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U216	4.72e-144	73.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033795.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	9.1e-10	23.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	5.0e-08	24.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	5.0e-08	24.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	1.6e-06	25.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 44..141 e-value: 1.1E-6 score: 29.6
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 36..183
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 36..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033795.jh1.t1	MELO3C033795.jh1.t1	mRNA