MELO3C033706 (gene) Melon (DHL92) v4

Overview
NameMELO3C033706
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr02: 4100151 .. 4100572 (+)
RNA-Seq ExpressionMELO3C033706
SyntenyMELO3C033706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCCGCCGCCGCCCTTGCCTCTCTTCTCTCCATTAAGATCTCTGGTGACAATCTCCCTCCGTCCGTCAAAGCCACCACTGTCACCTTAGTTCTCCGTCAAGCTTCTGTTCGTCGTTAGCCCAAGCCACCACACCCCGAGTCGCTCCCCTTTCTGTCAGCCATCTCCTCTGCGTCGCGACGTTCGAATCTGAAGCGAGTGGATTGCATTTGCTCCAACCGGTGTTTGACCACGAAGCTCTGATCGTCGTTGTCGCATCTCCACAAACCCAGTCGCCGCCCATCACGATCTCCCATTTTCATGGAGCTTGTTGCACCATCCATCCTTCTTCGTAGCATGTTACTGCACCAAGGCAGCGTGCTCTCCTTGCTGTTGAAGAAGCCTACGTCCTCGAGCAGTCATGTCCCAAGTGTGGGTGCATAG

mRNA sequence

CGGCCGCCGCCGCCCTTGCCTCTCTTCTCTCCATTAAGATCTCTGGTGACAATCTCCCTCCGTCCGTCAAAGCCACCACTGTCACCTTAGTTCTCCGTCAAGCTTCTGTTCGTCGTTAGCCCAAGCCACCACACCCCGAGTCGCTCCCCTTTCTGTCAGCCATCTCCTCTGCGTCGCGACGTTCGAATCTGAAGCGAGTGGATTGCATTTGCTCCAACCGGTGTTTGACCACGAAGCTCTGATCGTCGTTGTCGCATCTCCACAAACCCAGTCGCCGCCCATCACGATCTCCCATTTTCATGGAGCTTGTTGCACCATCCATCCTTCTTCGTAGCATGTTACTGCACCAAGGCAGCGTGCTCTCCTTGCTGTTGAAGAAGCCTACGTCCTCGAGCAGTCATGTCCCAAGTGTGGGTGCATAG

Coding sequence (CDS)

ATGGAGCTTGTTGCACCATCCATCCTTCTTCGTAGCATGTTACTGCACCAAGGCAGCGTGCTCTCCTTGCTGTTGAAGAAGCCTACGTCCTCGAGCAGTCATGTCCCAAGTGTGGGTGCATAG

Protein sequence

MELVAPSILLRSMLLHQGSVLSLLLKKPTSSSSHVPSVGA
Homology
[Close]
BLAST of MELO3C033706 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1    MELVAPSILLRSMLLHQGSVLSLLLKKPTSSSSHVPSVGA 41
            MELVAPSILLRS LLHQG +LSL LKKP SSSSHVPSVGA
Sbjct: 1007 MELVAPSILLRSTLLHQG-MLSLPLKKPPSSSSHVPSVGA 1045

[Close]
BLAST of MELO3C033706 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1    MELVAPSILLRSMLLHQGSVLSLLLKKPTSSSSHVPSVGA 41
            MELVAPSILLRS LLHQG +LSL LKKP SSSSHVPSVGA
Sbjct: 1007 MELVAPSILLRSTLLHQG-MLSLPLKKPPSSSSHVPSVGA 1045

[Close]
BLAST of MELO3C033706 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-04
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   MELVAPSILLRSMLLHQGSVLSLLLKKPTSSSSHVPSVGA 41
           MEL+APSILLRS L HQG VLS  LKKP SSSSHVPSV A
Sbjct: 143 MELIAPSILLRSTLPHQG-VLSSPLKKPPSSSSHVPSVDA 181

[Close]
BLAST of MELO3C033706 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-04
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   MELVAPSILLRSMLLHQGSVLSLLLKKPTSSSSHVPSVGA 41
           MEL+APSILLRS L HQG VLS  LKKP SSSSHVPSV A
Sbjct: 143 MELIAPSILLRSTLPHQG-VLSSPLKKPPSSSSHVPSVDA 181

The following BLAST results are available for this feature:
BLAST of MELO3C033706 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062299.11.1e-0587.50pol protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033706 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9C35.5e-0687.50Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5A7U8W26.7e-0480.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3BX226.7e-0480.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
BLAST of MELO3C033706 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033706.1MELO3C033706.1mRNA