MELO3C033699 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033699
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Photosystem II CP47 reaction center protein
Location	chr09: 13141654 .. 13142090 (+)
RNA-Seq Expression	MELO3C033699
Synteny	MELO3C033699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTGTTGTTGCTGAAACTATATAGTATGGTTTAGCAATTACCCTGATTGAATTATTTGGGCCCACTTGTTATCAATGGGATCTGGGATACTTCCAACAAGAAATTTATCGAAGAGTTAATACTGGGTTAGCCAAAAATCAAAGTCTATCATAAGCTTGGTCTAAAATTCCCAAAAAATTAGCTTTTTATGATTATATCAGGAATAATCCCACAAAAGGTGGATTATTTAGAGTGGGTTCCATGGACAACGGGGATGGAATAATTGTTGGTTGGTTAGAACACCCTATTTTTAGAGATAAAGAAGGACGCGAACTTTTTGTACGTTGTATGCCGACCTTTTTTGAAACATTTTCGGTTATTTTGGTAGACGAAGACAAAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAG

mRNA sequence

CTTTTGTTGTTGCTGAAACTATATAGTATGGTTTAGCAATTACCCTGATTGAATTATTTGGGCCCACTTGTTATCAATGGGATCTGGGATACTTCCAACAAGAAATTTATCGAAGAGTTAATACTGGGTTAGCCAAAAATCAAAGTCTATCATAAGCTTGGTCTAAAATTCCCAAAAAATTAGCTTTTTATGATTATATCAGGAATAATCCCACAAAAGGTGGATTATTTAGAGTGGGTTCCATGGACAACGGGGATGGAATAATTGTTGACGAAGACAAAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAG

Coding sequence (CDS)

ATGGACAACGGGGATGGAATAATTGTTGACGAAGACAAAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAG

Protein sequence

MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ

Homology

[Close]

BLAST of MELO3C033699 vs. NCBI nr
Match: QHO53759.1 (Photosystem II CP47 reaction center protein [Arachis hypogaea])

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI VD D IVRADVPFRRAESKYSVEQ
Sbjct: 330 MDNGDGIAVDGDGIVRADVPFRRAESKYSVEQ 361

[Close]

BLAST of MELO3C033699 vs. NCBI nr
Match: KAG5107046.1 (hypothetical protein JHK82_044016 [Glycine max])

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI VD D IVRADVPFRRAESKYSVEQ
Sbjct: 152 MDNGDGIAVDGDGIVRADVPFRRAESKYSVEQ 183

[Close]

BLAST of MELO3C033699 vs. NCBI nr
Match: QHN97233.1 (Photosystem II CP47 reaction center protein [Arachis hypogaea] >QHO07391.1 Photosystem II CP47 reaction center protein [Arachis hypogaea])

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI VD D IVRADVPFRRAESKYSVEQ
Sbjct: 237 MDNGDGIAVDGDGIVRADVPFRRAESKYSVEQ 268

[Close]

BLAST of MELO3C033699 vs. NCBI nr
Match: QHN80188.1 (Photosystem II CP47 reaction center protein [Arachis hypogaea])

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI VD D IVRADVPFRRAESKYSVEQ
Sbjct: 100 MDNGDGIAVDGDGIVRADVPFRRAESKYSVEQ 131

[Close]

BLAST of MELO3C033699 vs. NCBI nr
Match: KAF2291973.1 (hypothetical protein GH714_042457 [Hevea brasiliensis])

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1   MDNGDGIIV-DEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI V D D IVRADVPFRRAESKYSVEQ
Sbjct: 274 MDNGDGIAVGDGDGIVRADVPFRRAESKYSVEQ 306

[Close]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot
Match: A1EA34 (Photosystem II CP47 reaction center protein OS=Agrostis stolonifera OX=63632 GN=psbB PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VDE+ IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDEEGIVRADVPFRRAESKYSVEQ 394

[Close]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot
Match: B3TN75 (Photosystem II CP47 reaction center protein OS=Brachypodium distachyon OX=15368 GN=psbB PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VDE+ IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDEEGIVRADVPFRRAESKYSVEQ 394

[Close]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot
Match: P10900 (Photosystem II CP47 reaction center protein OS=Hordeum vulgare OX=4513 GN=psbB PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VDE+ IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDEEGIVRADVPFRRAESKYSVEQ 394

[Close]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot
Match: A8Y9B2 (Photosystem II CP47 reaction center protein OS=Lolium perenne OX=4522 GN=psbB PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VDE+ IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDEEGIVRADVPFRRAESKYSVEQ 394

[Close]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot
Match: P05641 (Photosystem II CP47 reaction center protein OS=Zea mays OX=4577 GN=psbB PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VDE+ IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDEEGIVRADVPFRRAESKYSVEQ 394

[Close]

BLAST of MELO3C033699 vs. ExPASy TrEMBL
Match: A0A6B9VIE4 (Photosystem II CP47 reaction center protein OS=Arachis hypogaea OX=3818 GN=DS421_19g676190 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDNGDGIIVDEDKIVRADVPFRRAESKYSVEQ 33
           MDNGDGI VD D IVRADVPFRRAESKYSVEQ
Sbjct: 100 MDNGDGIAVDGDGIVRADVPFRRAESKYSVEQ 131

[Close]

BLAST of MELO3C033699 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-06
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 7   IIVDEDKIVRADVPFRRAESKYSVEQ 33
           ++VD D IVRADVPFRRAESKYSVEQ
Sbjct: 369 VLVDGDGIVRADVPFRRAESKYSVEQ 394

The following BLAST results are available for this feature:

BLAST of MELO3C033699 vs. NCBI nr


Match Name	E-value	Identity	Description
QHO53759.1	7.0e-06	90.63	Photosystem II CP47 reaction center protein [Arachis hypogaea]	[more]
KAG5107046.1	7.0e-06	90.63	hypothetical protein JHK82_044016 [Glycine max]	[more]
QHN97233.1	7.0e-06	90.63	Photosystem II CP47 reaction center protein [Arachis hypogaea] >QHO07391.1 Photo...	[more]
QHN80188.1	7.0e-06	90.63	Photosystem II CP47 reaction center protein [Arachis hypogaea]	[more]
KAF2291973.1	1.7e-04	87.88	hypothetical protein GH714_042457 [Hevea brasiliensis]	[more]

BLAST of MELO3C033699 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1EA34	2.8e-05	84.62	Photosystem II CP47 reaction center protein OS=Agrostis stolonifera OX=63632 GN=...	[more]
B3TN75	2.8e-05	84.62	Photosystem II CP47 reaction center protein OS=Brachypodium distachyon OX=15368 ...	[more]
P10900	2.8e-05	84.62	Photosystem II CP47 reaction center protein OS=Hordeum vulgare OX=4513 GN=psbB P...	[more]
A8Y9B2	2.8e-05	84.62	Photosystem II CP47 reaction center protein OS=Lolium perenne OX=4522 GN=psbB PE...	[more]
P05641	2.8e-05	84.62	Photosystem II CP47 reaction center protein OS=Zea mays OX=4577 GN=psbB PE=3 SV=...	[more]

BLAST of MELO3C033699 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9VIE4	3.4e-06	90.63	Photosystem II CP47 reaction center protein OS=Arachis hypogaea OX=3818 GN=DS421...	[more]

BLAST of MELO3C033699 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	4.4e-06	84.62	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.680.10	Photosystem II CP47 reaction center protein	coord: 1..32 e-value: 8.2E-11 score: 43.9
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 7..32 e-value: 1.6E-6 score: 27.1
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033699.1	MELO3C033699.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding