MELO3C033686 (gene) Melon (DHL92) v4

Overview
NameMELO3C033686
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase catalytic domain-containing protein
Locationchr03: 14945836 .. 14946120 (+)
RNA-Seq ExpressionMELO3C033686
SyntenyMELO3C033686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCTAAATGTTGACGACTAGGTAAACGGTGGGGTGCAAACCGACGAAAACGACAGAGGACAGAGTTTTCGTGGATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAAGAGAAGGTTCGTGCGAGAGATTTAG

mRNA sequence

ATGGTGAATCTAAATGTTGACGACTAGGTAAACGGTGGGGTGCAAACCGACGAAAACGACAGAGGACAGAGTTTTCGTGGATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAAGAGAAGGTTCGTGCGAGAGATTTAG

Coding sequence (CDS)

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAAGAGAAGGTTCGTGCGAGAGATTTA

Protein sequence

MGKTKSWKATSLREKAFREQGGRREGSCERFRVMANKEDKEKVRARDL
Homology
[Close]
BLAST of MELO3C033686 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 8  KATSLREKA---------FREQGGRREGSCERFRVMANKEDKEK 43
          KA S+REKA         F EQGGRREGSCERFRVMANKED+EK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C033686 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.6e-05
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 8  KATSLREKA---------FREQGGRREGSCERFRVMANKEDKEK 43
          KA S+REKA         F EQGGRREGSCERFRVMANKED+EK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C033686 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.12.0e-0470.45uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C033686 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7849.6e-0570.45Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C033686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033686.1MELO3C033686.1mRNA