MELO3C033680.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033680.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr09: 4045738 .. 4046617 (-)
RNA-Seq Expression	MELO3C033680.jh1
Synteny	MELO3C033680.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGTTTGAACATATTTATACATCTAAAGGTTTATCACATGTTTCAACGTCCGTATTTAGAGTTTTAAATTTAGTCACTCACTAGGCCTCGTAGCTCATTCTTTTCAAAATGTTTCCCACTTTTCAGGTAGAGATTGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTAAATAATATCGTCTTGGAGGTCGTGATCATAAAACTCTAGTTGTATAGGTTTTGGTCGTGATGTTTATATCAGGTTATTTTACAAACCAAGTGATGTCAGGGCTGCATCTTATGTATGTTGGGAAGGTTTTTGTGGTTTCCTCTATGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGGTATGTTTATAGGGCTTAACATTCAGTAGGGTCAGCAGGGATCGTTAAAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGACAGTAGGTGGTCCGGGAGGGGGTGTGACATGATGTCTCCATAAAACCTTTATTAGTGGAATCGTCTTGTTTCTCAAAACTTTTTCCTTTCTATCGAGAATCTAAACTGGTTCTTCAACATAACTCAAATCTTCTTTTAATTCAACCGGTTGCTCTTGCAACACATGTGATGGATCTCAAGTCTTTTATTTATATATATATAAATATATACATATATACCAAATTTCCATTTTCTTTTATTCCTTTTAAAAGAAAGTCCAAAGAATATATCGAGTTTACAACGGTAGTAAAGGAAAACCACCTCGATCGGATGAGAGTAAGCAAGAATGTTGTTTAGGCCCCTTGCCTTGA

mRNA sequence

ATGCTTTGTTTGAACATATTTATACATCTAAAGGTAGAGATTGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGAAAGTCCAAAGAATATATCGAGTTTACAACGGTAGTAAAGGAAAACCACCTCGATCGGATGAGAGTAAGCAAGAATGTTGTTTAGGCCCCTTGCCTTGA

Coding sequence (CDS)

ATGCTTTGTTTGAACATATTTATACATCTAAAGGTAGAGATTGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGAAAGTCCAAAGAATATATCGAGTTTACAACGGTAGTAAAGGAAAACCACCTCGATCGGATGAGAGTAAGCAAGAATGTTGTTTAGGCCCCTTGCCTTGA

Protein sequence

MLCLNIFIHLKVEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFCKKVQRIYRVYNGSKGKPPRSDESKQECCLGPLP

Homology

[Close]

BLAST of MELO3C033680.jh1 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 4.45e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC----KKVQRIYRVYNGSKGKP 71
           VEIEL +PDTLPTS+ESS+SNSSTWLELYFESVHVE+FC    + +  ++ +Y G +GK 
Sbjct: 107 VEIELPMPDTLPTSSESSKSNSSTWLELYFESVHVEIFCYFTKQVMSELHLMYVGKQGKQ 166

Query: 72  PRSDES 73
              +E+
Sbjct: 167 GSLEET 172

[Close]

BLAST of MELO3C033680.jh1 vs. NCBI nr
Match: TYK18765.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.01e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC 50
           VEIELLVPDTLPTSAESSESNS+TWLELYFES+HVEMFC
Sbjct: 409 VEIELLVPDTLPTSAESSESNSNTWLELYFESIHVEMFC 447

[Close]

BLAST of MELO3C033680.jh1 vs. NCBI nr
Match: KAA0057197.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.01e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC 50
           VEIELLVPDTLPTSAESSESNS+TWLELYFES+HVEMFC
Sbjct: 409 VEIELLVPDTLPTSAESSESNSNTWLELYFESIHVEMFC 447

[Close]

BLAST of MELO3C033680.jh1 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.05e-15
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC-------KKVQRIYRVYNGSK 65
           VEIEL VPDTLPTSAESSESNSSTWLELYFESVHVEMFC        ++  ++ V  GS 
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

[Close]

BLAST of MELO3C033680.jh1 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.06e-15
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC-------KKVQRIYRVYNGSK 65
           VEIEL VPDTLPTSAESSESNSSTWLELYFESVHVEMFC        ++  ++ V  GS 
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

[Close]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.15e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC----KKVQRIYRVYNGSKGKP 71
           VEIEL +PDTLPTS+ESS+SNSSTWLELYFESVHVE+FC    + +  ++ +Y G +GK 
Sbjct: 107 VEIELPMPDTLPTSSESSKSNSSTWLELYFESVHVEIFCYFTKQVMSELHLMYVGKQGKQ 166

Query: 72  PRSDES 73
              +E+
Sbjct: 167 GSLEET 172

[Close]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D5E2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00700 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.91e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC 50
           VEIELLVPDTLPTSAESSESNS+TWLELYFES+HVEMFC
Sbjct: 409 VEIELLVPDTLPTSAESSESNSNTWLELYFESIHVEMFC 447

[Close]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL
Match: A0A5A7URC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00290 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.91e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC 50
           VEIELLVPDTLPTSAESSESNS+TWLELYFES+HVEMFC
Sbjct: 409 VEIELLVPDTLPTSAESSESNSNTWLELYFESIHVEMFC 447

[Close]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.93e-15
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC-------KKVQRIYRVYNGSK 65
           VEIEL VPDTLPTSAESSESNSSTWLELYFESVHVEMFC        ++  ++ V  GS 
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

[Close]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.93e-15
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 12  VEIELLVPDTLPTSAESSESNSSTWLELYFESVHVEMFC-------KKVQRIYRVYNGSK 65
           VEIEL VPDTLPTSAESSESNSSTWLELYFESVHVEMFC        ++  ++ V  GS 
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

The following BLAST results are available for this feature:

BLAST of MELO3C033680.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062263.1	4.45e-15	59.09	hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]	[more]
TYK18765.1	6.01e-15	94.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0057197.1	6.01e-15	94.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK26572.1	6.05e-15	68.85	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	6.06e-15	68.85	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033680.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2F2	2.15e-15	59.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D5E2	2.91e-15	94.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G0070...	[more]
A0A5A7URC7	2.91e-15	94.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G0029...	[more]
A0A5D3DSY7	2.93e-15	68.85	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7V9N3	2.93e-15	68.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of MELO3C033680.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033680.jh1.t1	MELO3C033680.jh1.t1	mRNA