MELO3C033366.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033366.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr08: 21560359 .. 21561811 (+)
RNA-Seq ExpressionMELO3C033366.jh1
SyntenyMELO3C033366.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATGTGGTGCAGCGAAGGATAGCTGAAGAGGTAAATTTTTTCAGATAAACATCATTCTTGCTTAGGTGTCATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAGATCTCTCCTGTTGTCATTAATGGTTTTCTGCGTAATAATGTTGGGTCTAATTACTCTCCTTCTAATCCATCTAATGAAGTTTTAACGTCTGTATTAACTGGATGGACACTATCTTCCTGGCCTGTTAATGGAATCCATGCAGTTGCTCTCAGTGTTAAATATGTCATTCTTCATAAGGTTGGTATTGCCAATTGGTTCCCGTTTTCTTATGCTTTCAGTGTGTCTGTTGCGTTGGGAACATTTCTATATCAGATATGCCATGACGACTCTATAGATACAGGATCTTTTATATATAATCAGCTGCTGAGGCATGTAGGATCGTTTGGGGTTAAAATCCCTATTGCTTTACAACGATTTTTCTCTGGTCTACTACTTCATCTGAATAATGTTGTCTTAACAATGTCTGATCCCCGGGACCTGAACCAAATACCTTATCCTTGAATTACATACTTTTTTAGGGCAGTCATGTGCCAGATATAGAACATGACTTGCGTCCTTCACGAGCTCTCGAATGTTTGACATAAATGATTGGGATGAGAGTGCTGAAGGCTTCTTTGTTGATCGAGAATCGGCTTCCAGAATAGTCAAACACACTAGCAGCTGAGTCTCAAGCTCTCTCTACTTCCATTAATTTGTTATTTGAACGAAGGATAGAGGTTGATTCACTAATTCGTCACTTAAAATCATTGGCTCCTTCTACTAGTATAGGGGAGCATGGTTTTGAGTGATATTTCTTTTTGGTCCAAAGGGGGAGTAGTAGCAAGGTTGGACGATGGTTGATGGGCAAATGTAGCTGAAGCTGGAGTGCTGTTTTGTTGACATTATATTTTGTTTTGTTTCCCCTGGTTTAAGTTTCTATTTGAAGTTGTTTAAACTTTTGCAAGTTAGTACGATTTTTTAAAAACAAAAAACTTCTGTCTTGATGTTTAAAAAAAACTACTGGAATGAAATGATGTTCAAGTTAGTTTGTTGGTGGAAGTTTATGTGTTAGTTATTGGTGTTGTATGTGTGTGAATTTGTTGTATAAGATGCCCTGATGATGATTGTGTTGATATGTTGTGCTCCTTTATCTTTGCTAGTTATCTGATCCATGAGACAGTTCTGAGAAGCGGTGTCTTAAACTAGAAAAGAAATCTCCTTTTAGACAAAAGGGGGAGTTTGTTGGGATTTTGTCTAAAAGACATTGTGAGGATTGTGTTTTTAAGGATAAGATAA

mRNA sequence

ATGAAAAATGTGGTGCAGCGAAGGATAGCTGAAGAGGTAAATTTTTTCAGATAAACATCATTCTTGCTTAGGTGTCATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAGATCTCTCCTGTTGTCATTAATGGTTTTCTGCGTAATAATGTTGGGTCTAATTACTCTCCTTCTAATCCATCTAATGAAGTTTTAACGTCTGTATTAACTGGATGGACACTATCTTCCTGGCCTGTTAATGGAATCCATGCAGTTGCTCTCAGTGTTAAATATGTCATTCTTCATAAGGTTGGTATTGCCAATTGGTTCCCGTTTTCTTATGCTTTCAGTGTGTCTGTTGCGTTGGGAACATTTCTATATCAGATATGCCATGACGACTCTATAGATACAGGATCTTTTATATATAATCAGCTGCTGAGGCATGTAGGATCGTTTGGGGTTAAAATCCCTATTGCTTTACAACGATTTTTCTCTGGTCTACTACTTCATCTGAATAATGTTGTCTTAACAATATGCCCTGATGATGATTGTGTTGATATGTTGTGCTCCTTTATCTTTGCTAGTTATCTGATCCATGAGACAGTTCTGAGAAGCGGTGTCTTAAACTAGAAAAGAAATCTCCTTTTAGACAAAAGGGGGAGTTTGTTGGGATTTTGTCTAAAAGACATTGTGAGGATTGTGTTTTTAAGGATAAGATAA

Coding sequence (CDS)

ATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAG

Protein sequence

MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Homology
[Close]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008442287.1 (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo] >KAA0041309.1 uncharacterized protein E6C27_scaffold128G003060 [Cucumis melo var. makuwa] >TYK02768.1 uncharacterized protein E5676_scaffold145G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 7.99e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 5.33e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          MSLIEKV LSK ISNVGPFYPQLI +FIVNLPTDFND SSPD+QT+HIRG KF
Sbjct: 1  MSLIEKVGLSKTISNVGPFYPQLIRKFIVNLPTDFNDPSSPDFQTIHIRGFKF 53

[Close]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008457126.1 (PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.73e-20
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M LIE+  L+K ISNVGPFYPQLI EFIVN P DFND SSPDYQTVHIRG KF
Sbjct: 1  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKF 53

[Close]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008456217.1 (PREDICTED: uncharacterized protein LOC103496220 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.19e-20
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLK 52
          M+LIEK  LSK IS+VGPFYPQLI EF+VNLPTDFND SSP+YQT+HIRG K
Sbjct: 1  MNLIEKAGLSKTISDVGPFYPQLIREFVVNLPTDFNDPSSPNYQTIHIRGFK 52

[Close]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: TYK02780.1 (uncharacterized protein E5676_scaffold145G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.30e-20
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M+LI K  LSK IS+V PFYPQLI EF+VNLPTDFND SSPDYQT+HIRG KF
Sbjct: 1  MNLIAKSGLSKTISDVDPFYPQLIREFVVNLPTDFNDPSSPDYQTIHIRGFKF 53

[Close]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00250 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.87e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B4V9 (uncharacterized protein LOC103486195 OS=Cucumis melo OX=3656 GN=LOC103486195 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.87e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4L2 (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.58e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          MSLIEKV LSK ISNVGPFYPQLI +FIVNLPTDFND SSPD+QT+HIRG KF
Sbjct: 1  MSLIEKVGLSKTISNVGPFYPQLIRKFIVNLPTDFNDPSSPDFQTIHIRGFKF 53

[Close]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C633 (uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.36e-21
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M LIE+  L+K ISNVGPFYPQLI EFIVN P DFND SSPDYQTVHIRG KF
Sbjct: 1  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKF 53

[Close]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C400 (uncharacterized protein LOC103496220 OS=Cucumis melo OX=3656 GN=LOC103496220 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.54e-20
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLK 52
          M+LIEK  LSK IS+VGPFYPQLI EF+VNLPTDFND SSP+YQT+HIRG K
Sbjct: 1  MNLIEKAGLSKTISDVGPFYPQLIREFVVNLPTDFNDPSSPNYQTIHIRGFK 52

The following BLAST results are available for this feature:
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442287.17.99e-2798.11PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo] >KAA0041309.1 unc... [more]
XP_016903164.15.33e-2284.91PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo][more]
XP_008457126.11.73e-2079.25PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo][more]
XP_008456217.13.19e-2078.85PREDICTED: uncharacterized protein LOC103496220 [Cucumis melo][more]
TYK02780.13.30e-2077.36uncharacterized protein E5676_scaffold145G00390 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033366.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIX53.87e-2798.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4V93.87e-2798.11uncharacterized protein LOC103486195 OS=Cucumis melo OX=3656 GN=LOC103486195 PE=... [more]
A0A1S4E4L22.58e-2284.91uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=... [more]
A0A1S3C6338.36e-2179.25uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=... [more]
A0A1S3C4001.54e-2078.85uncharacterized protein LOC103496220 OS=Cucumis melo OX=3656 GN=LOC103496220 PE=... [more]
BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033366.jh1.t1MELO3C033366.jh1.t1mRNA