MELO3C033272.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033272.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionSWIM-type domain-containing protein
Locationchr08: 15153406 .. 15156646 (+)
RNA-Seq ExpressionMELO3C033272.jh1
SyntenyMELO3C033272.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTGTTTCAAGGAGCTCACATTCCTGATGTTGCTACAAAGTTTGACAATGATCCAGATGGAACCAGTACTCCTGCTGCTTCACATTCTGCTGTTGGCCATCCTCATACTCTCTCTGTATCACTTGCCAATCGTATGTTGTAAGCTTTAATTGCCGAATCTCGCGCTCTAACCCGTCAAATAAGTGAGCAAACCGATCGACGCACTGTGTTGGATGCTGTCATTCGTGACCTCCGACGTGCAGCCTCCAGAGCTGCCCCCCTCCGTCTGATTAAGAAGTTCTGGCTTTAATTTTGCATTCAAGCAAGGGGAGTTGGTTGGCATGTGGTTTTGTGATCAGCAAAGTTGGTTTCAGTTTTTTTGTGATCAATAGTCTTTTTTTTTTTTTTTTGTCATATCAGTAGATTCAGTAGGTTTCTGCTTCAGAAGAATTTTTGTTGTGTGAATTCTGTTCCGTCAACGATCTCAGTACGGTTCATTTGGTTTAGGTCATAATGTTTCAGCTCAGTTGACAGATGAGTTTATAGTTGTTTGCTGTTAATCTCTTCATTGGTCGAAATATGTTTTCTCTTAATCTGGGTTCTATGTGCTCTAATTACGACACTCAGGAAGTTAGTTAATCTGGGTGCTTGACTGCAGAAATAAAAGTCAGTGGTACCAATGGGGAGTTTGTTAAGCAAATTGGTCTCACATGATTATTTCTTTTAACAACCAGCTTAAGATTCTCTTCTTAAAAATAGAATCCGGTTGAACTAATAAAGTGGACCCAAGTAGTTAAGATTATTTATGAATTAGTTACTTCCTAAGGAAGTATCATCAAGTTTAAATAATGGAGTTTGGTAAGCTTCCAGTTGCGGCTTATGAAAAACTCAAAATGAAGAAATCACTAGATAGATAAGTTTGACAAGTCGACGTTGAAAATACCCTCAACTAGTGCCACCATTGAGGGGGAGCTCTATGCCATTCACTATATAGTTATGATCATTATGTTCATAATTTAGTTCTGTCTTGAACAGTCCGAGAATAGTACAGGAACAAAAGATCATAGTGTTGTTCCTCCAGTCATAACTATGTATTCAACTTTCATTATATTTGTTATTAATACAATCCTCTATCTAGGCGAACCGCCCCCAGGTGTAGATGCTTATTCATCGAACTGGGTTAATAAACTTTGTTGTGTTGTACTACTTGTCTATCTCTATTGCGCTCTACTATTCACATAAATGAAACTACTTCTGTTGAACATCTCGAAGATCGTTCATATTTCACACAGATAATCATTACCAACTCAACTCAACCCAAACCATGCACTCAAAATGCTAAAAAAACTAGGCTTCAGGAATTGTTTTGGTATTTTGTAATTAACTAAGAATTCCAATATTGATATTGGTATAAGAAATATGGCAACCATGAGTAAAAAAATGTGGGAAGACAATCAATTTTTGTAATCATTTGGTTTTTATTTTTTGTTTTTGAAAATGAAGCATATGTTACTCTTTCCACCACTATATTTTTTGTTTTATTATTTACTCTCTAAGGACGTTTTAAAAAATCGAACTAAAATTTGAAAAGTAAAAAAGACAAACAGTCCTTTTTTTTAAGGGGAATTTACATCAATAAAAGAAAATACAAGTATTTGCATCCTATATGCAGAAAAGAAAATGGAGGACATATATTAATTTTATACAATTCCAAAAATACCCCTAGCACACTTAAATATTTGCTCGAGGAAACTCTGCTTCTTCATATTCTTCGGCAACTTCTTCTTCCGAGTTCTTCTTCCTTTGTTTTCATGATCTTCTTCGTTTATTTTTTTCTCATCGTTTTCTTCATTTATCTCAAATATTGCAGCAATATCTCTCCACATCTATAACTAAGTAATCCATCACTAACAGTAAGTATTTCTACAGTCGGTGTTTCCACTTCCACAATAATTTCCTATCTCGGTATTTTTTTTTCTTTTCCTTCTTATATTCTTCTATTCTTCTTTCTTCATTTTGTTCGTGTTTCCTCATCCATCATCAAAATATCCACACAAATTCCTTTTTGGATATTCCTTTTTTTTTTTTGTTTTTCGTTTTTTCCTTCTTCTTTTTCTTCTCGTTCTTCTTTCGTCTTCTTGTTGTTATGCTGCAGCTTTTTCTTTTATGTTTTAGGTTTTAATTTAATGATGTTCTATTTTTCTTTATTGTTTAATCAAATTCAGCAATTCAATTGTAAGTACTAGACCTTGAAATTAAAGTATTTTTGGTGAATTAATTTAAATTTTGTGGATTATTTTCTGCAAATTGTTTATGTTTTAAGGATGTTCATTTTTATTTGTGTGTGATTCATACATATAATTAGTTCTTCCTTCGCTTCAATTTCTTTGTGTATTAATTTACAAATAAGTTGAAATTTTATTCTTTTTTCTTTTAACGTGAAGATGTACGGTTTAAGTTTTATCTATCAATTATACTTCGTGTGAAAATGTAGTAATCAAAATTAGTTTGCAATAGAGCCTTATCATTTTCTATCACTCATGGACAGTTGATAGAACTCTATCACTTTCTATCATTGATGGACGGTGATAAAACTCTATCACTTTTCTATCACCGATGGACAATAATTGAAGAAAATTAAAGCTAGGTTGTCAATGAAAAATTTTAACCTCTTGGGTTGAAAATATATTATGTAAGCAACATGAAGAATCAAGAAGTTTCTTGGTAAGAGTTCTTTTCTTTTTTTTTTCATTATTTTTAATTACTTTGATATTTCAAATTGATAGAAGAACGAAAGGCAGTGATAAAAGTCTATCATTGTCTATCAGTGATAGAAGTCTATCATCAAGTGGTGATAGAAAGTCTATCGAATGATAGATTGTGATAGAACTATGAACATTTATTTGTAAATGTTGATTTCTTTTTCTATTTTCATTTAATAGGTTCATCTTATCAACAATGTTCAATACAATGTAATGGCTGGTGATAAACAATTCATAGTGAAGTTGAATTTGGGATCTTGTAGCTGTCGAGTATGGGATTTCCATGAGATTCCATGTTCTCATACTCTTGTTGTTCTTCGGATGCTTAACCTAAATACTTATTATTATGTGTCTGATTATAATCACTCACAAACATTTTTGTCATCATATTTGGGTTGTGTGTGACAAGATGTAGTACTTGTCATGGAAAGGGTCATAATTCTAGAACTTGCAAACTTGGTCAAATTAAACAATGATATACTCATTATAGTTGCA

mRNA sequence

ATGCACTTGTTTCAAGGAGCTCACATTCCTGATGTTGCTACAAAGTTTGACAATGATCCAGATGGAACCAGTACTCCTGCTGCTTCACATTCTGCTGTTGGCCATCCTCATACTCTCTCTGTATCACTTGCCAATCGTATGTTGTAAGCTTTAATTGCCGAATCTCGCGCTCTAACCCGTCAAATAAGTGAGCAAACCGATCGACGCACTGTGTTGGATGCTGTCATTCGTGACCTCCGACGTGCAGCCTCCAGAGCTGCCCCCCTCCGTCTGATTAAGAAATTCAGTAGGTTTCTGCTTCAGAAGAATTTTTGTTGTGTGAATTCTGTTCCGTCAACGATCTCATCCGAGAATAGTACAGGAACAAAAGATCATAGTGTTGTTCCTCCAGTCATAACTATGTATTCAACTTTCATTATATTTGTTATTAATACAATCCTCTATCTAGGCGAACCGCCCCCAGGTGTAGATGCTTATTCATCGAACTGGGTTCATCTTATCAACAATGTTCAATACAATGTAATGGCTGGTGATAAACAATTCATAGTGAAGTTGAATTTGGGATCTTGTAGCTGTCGAGTATGGGATTTCCATGAGATTCCATGTTCTCATACTCTTGTTGTTCTTCGGATGCTTAACCTAAATACTTATTATTATGTGTCTGATTATAATCACTCACAAACATTTTTGTCATCATATTTGGGTTGTGTGTGACAAGATGTAGTACTTGTCATGGAAAGGGTCATAATTCTAGAACTTGCAAACTTGGTCAAATTAAACAATGATATACTCATTATAGTTGCA

Coding sequence (CDS)

ATGTATTCAACTTTCATTATATTTGTTATTAATACAATCCTCTATCTAGGCGAACCGCCCCCAGGTGTAGATGCTTATTCATCGAACTGGGTTCATCTTATCAACAATGTTCAATACAATGTAATGGCTGGTGATAAACAATTCATAGTGAAGTTGAATTTGGGATCTTGTAGCTGTCGAGTATGGGATTTCCATGAGATTCCATGTTCTCATACTCTTGTTGTTCTTCGGATGCTTAACCTAAATACTTATTATTATGTGTCTGATTATAATCACTCACAAACATTTTTGTCATCATATTTGGGTTGTGTGTGA

Protein sequence

MYSTFIIFVINTILYLGEPPPGVDAYSSNWVHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHSQTFLSSYLGCV
Homology
[Close]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match: XP_011654398.1 (uncharacterized protein LOC105435382 [Cucumis sativus])

HSP 1 Score: 135 bits (339), Expect = 6.17e-37
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 28  SNWVHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYV 87
           S WVH INN++YNVM GDKQ IVKLNLGSCSCRVWDFHEIPCSH LVVL MLNLN+Y YV
Sbjct: 99  SFWVHPINNIEYNVMVGDKQLIVKLNLGSCSCRVWDFHEIPCSHALVVLWMLNLNSYSYV 158

Query: 88  SDYNHSQTFLSSYLGCV 104
           SDY HSQT LS+YLG V
Sbjct: 159 SDYYHSQTLLSTYLGHV 175

[Close]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match: XP_038904248.1 (uncharacterized protein LOC120090597 [Benincasa hispida])

HSP 1 Score: 112 bits (280), Expect = 3.76e-27
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 31  VHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDY 90
           VH I+NVQY+VM GDKQF+VKLNLGSCSCRVWDF EI CSH LV+L +LN++ Y YVS+Y
Sbjct: 213 VHPIDNVQYSVMDGDKQFLVKLNLGSCSCRVWDFEEISCSHALVILELLNMDIYSYVSNY 272

Query: 91  NHSQTFLSSYLGCV 104
            +S T   +YLGCV
Sbjct: 273 YYSSTLSWTYLGCV 286

[Close]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match: XP_038896605.1 (uncharacterized protein LOC120084863 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 1.28e-21
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 31  VHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDY 90
           +H I  V+Y+VM GDKQF+VKLN  SCS +VWDF EIPCSH LVVLR+LN++ Y Y+S+Y
Sbjct: 563 IHPIEIVEYSVMDGDKQFLVKLNFESCSLQVWDFEEIPCSHVLVVLRLLNMDIYSYISNY 622

Query: 91  NHSQTFLSSYLGCV 104
            +S     +Y+GCV
Sbjct: 623 YYSSALSWTYMGCV 636

[Close]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match: KAA0062291.1 (hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK26695.1 hypothetical protein E5676_scaffold313G003560 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.02e-20
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 34  INNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHS 93
           I+  +Y V  G++QFIVKLN+G CSCRVWD  EIPC+H L VLRMLNL+TY YVS + + 
Sbjct: 176 ISTTEYQVTDGNQQFIVKLNVGCCSCRVWDIEEIPCAHALAVLRMLNLDTYSYVSKFYYR 235

Query: 94  QTFLSSYLGC 103
           +T  ++Y GC
Sbjct: 236 ETLSATYNGC 245

[Close]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.46e-20
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 34  INNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHS 93
           I+  +Y V  G++QFIVKLN+  CSCRVWD  EIPC+H LVVLRMLNL+TY YVS++ + 
Sbjct: 193 ISTTEYQVTNGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYR 252

Query: 94  QTFLSSYLGCV 104
           +T   +Y GC+
Sbjct: 253 ETLSETYNGCI 263

[Close]
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9D5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003560 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.77e-21
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 34  INNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHS 93
           I+  +Y V  G++QFIVKLN+G CSCRVWD  EIPC+H L VLRMLNL+TY YVS + + 
Sbjct: 176 ISTTEYQVTDGNQQFIVKLNVGCCSCRVWDIEEIPCAHALAVLRMLNLDTYSYVSKFYYR 235

Query: 94  QTFLSSYLGC 103
           +T  ++Y GC
Sbjct: 236 ETLSATYNGC 245

[Close]
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.19e-20
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 34  INNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHS 93
           I+  +Y V  G++QFIVKLN+  CSCRVWD  EIPC+H LVVLRMLNL+TY YVS++ + 
Sbjct: 193 ISTTEYQVTNGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYR 252

Query: 94  QTFLSSYLGCV 104
           +T   +Y GC+
Sbjct: 253 ETLSETYNGCI 263

[Close]
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CSI6 (uncharacterized protein LOC103504407 OS=Cucumis melo OX=3656 GN=LOC103504407 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.44e-19
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 31  VHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDY 90
           V+ IN+V++ V+ G KQFIV+L+  SC+CRVWD  +IPC+H L VLR  ++NTY +VS Y
Sbjct: 1   VNAINDVEFQVIEGRKQFIVRLDCKSCTCRVWDLDKIPCAHALAVLRGRSMNTYSFVSKY 60

Query: 91  NHSQTFLSSYLGCV 104
             S T +S+Y G V
Sbjct: 61  FLSSTLISTYTGSV 74

[Close]
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJR8 (MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00300 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.07e-18
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 31  VHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDY 90
           V+ IN+V++ V+ G KQFIV+L+  SC+CRVWD  EIPC+H L VLR  N+NTY +VS Y
Sbjct: 574 VNAINDVEFQVIDGRKQFIVRLDCKSCTCRVWDLDEIPCAHALAVLRGRNMNTYSFVSKY 633

Query: 91  NHSQTFLSSYLGCV 104
             S T +S+Y G V
Sbjct: 634 FLSSTLISTYTGSV 647

[Close]
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.30e-17
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 23  VDAYSSNWVHLINNVQYNVMAGDKQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLN 82
           VD   S  V+ ++ V++ V+ G K F+VKLN  SCSC  WD  EIPC+H L+V+R LNLN
Sbjct: 62  VDESRSFIVNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLN 121

Query: 83  TYYYVSDYNHSQTFLSSYLGCV 104
            Y +VS Y ++    ++Y G V
Sbjct: 122 PYAFVSQYYYATVLSATYGGLV 143

[Close]
BLAST of MELO3C033272.jh1 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 17/55 (30.91%), Postives = 32/55 (58.18%), Query Frame = 0 

Query: 46  KQFIVKLNLGSCSCRVWDFHEIPCSHTLVVLRMLNLNTYYYVSDYNHSQTFLSSY 101
           +++IV+LN+ +C+CR +  ++ PC H L V   L +N   YV +    + +  +Y
Sbjct: 632 EEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTY 686

The following BLAST results are available for this feature:
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654398.16.17e-3781.82uncharacterized protein LOC105435382 [Cucumis sativus][more]
XP_038904248.13.76e-2768.92uncharacterized protein LOC120090597 [Benincasa hispida][more]
XP_038896605.11.28e-2159.46uncharacterized protein LOC120084863 [Benincasa hispida][more]
KAA0062291.12.02e-2058.57hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK2669... [more]
TYK07957.12.46e-2057.75hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033272.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033272.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9D59.77e-2158.57SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3C7L71.19e-2057.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CSI68.44e-1952.70uncharacterized protein LOC103504407 OS=Cucumis melo OX=3656 GN=LOC103504407 PE=... [more]
A0A5D3DJR85.07e-1855.41MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVP44.30e-1746.34SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of MELO3C033272.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G64260.17.0e-0530.91MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 55..82
e-value: 1.7E-7
score: 40.9
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 39..80
e-value: 2.0E-8
score: 33.7
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 48..80
score: 10.546232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033272.jh1.t1MELO3C033272.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding