MELO3C033191 (gene) Melon (DHL92) v4

Overview
NameMELO3C033191
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr08: 9848294 .. 9850440 (+)
RNA-Seq ExpressionMELO3C033191
SyntenyMELO3C033191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGTCAGACTATACACCAACTCGTAACGTATGTCTTGATGCATCGAAAGCTATAGTGATACTCCTAATAGCATGAACAAAACGTCGGGATATATTAGAGCATACCTGACATTTTGTTGGCAGTTATTGGAATTTATGTCCTAAAACATGTACTTTGTTATTTGATTCAATAAATTTTATTATTGAATGTTATAATCTTAAAACCAATAAATTTAGGTCCCGAAGCTATTTTATTTAGTTTGTCAAATACACTTGAACTTTATGTTGAGACATAAACATGGATTAAGTTCAAGTTAATAACCCAAATAGTCTATAGTGTATGAATAAGGTTGGGTGCCTTGTTCAGGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTAAATGGTTTACATAGACTAGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTGACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTCTATTCATTCGGTAGTATTCGTAGATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGGTAAGACCGAGTGGATAGCTAAGGACATAGGGTGCAAGATGGAATTCACTCCTACCCATTTCTGGAATAGTAGATAGGGTTTTCCCTTAAGGACTGAATCCAAGCCTTGAACAAGGGGCCCCACCTTCTCATTGGTCCGAGAAGGATTCTGGTTTATAGGTTGGACCTTAAACCAATTGTTCGATAGTGGATCAGTGAGTCTTAAGGAGCAAGATGTAATCTCGGGGGTAAAATGGTATTTTGACCCAGCCAAGATTACGAACAACCTGTGAAGGACTGACTTGCCCATCATGGTTATATCAAGTGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAGTGTTGATTAAGCTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCATTGGAGCGCATGATCTATAGTTCCATTAGGTTCCCCTACTAGCTCATATGGATTCAACCAAGAACAAAATTTTGAAGTAACTCGAATTGTTCGAATTAAGAAAAGAGAGAGAAACCGACAAATATATAAGATATAAGTTGGTAGAAATAAACTTTAAGCTTTTTGTTTAAATATGATTTAAATAAATATGAATATAGATTCATATTTAAAAGCTTGAAAAGTTTTGAAATGGTCAAAGTTGTAAAATTCAACTTGTTGATTTTTAACTTTGAGAAATAAAACTTTGACTGGGTTTATATACAAATACGATTTGAATTTTAGAAAGATGAATGCGAATTCATACTTGGGAGTTTTGAATTAGTCAAAACGAAAAAATTACTAAAATGTCAAAAAGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTGACTAAATTGGTCAAATGACCAAAATGTCCCTTTGACTAATTACTTAATTACTAAATGTTAGTGGGCGATGTGAAAGCCGATTATGAATTAAAAAGTTAATGAAAAGATTAGGTGTATATGAAATAAATTGCATGTAATTTGCATGAAGATTTCATATAAAATATTTCTCATTACAGAATGAAAAAAAGAGATGTTCTTCTGGAAAACCACCTAAACGATACGCTCCTCATCTCTCTCTATATTTTACTTTAAAAAACCGAGTCCCACAACTCCGTTCTTGGTCATGAGCATAGTAGGTTAGCTAACTTGGTGGTTGTCCTTGTTCGTGATTTTCGGGCAGAGAAGGAAAATAATTCGAAAAAGAAGCCCATAACTATAAAAGGTAAGTTATTCTTTTACCTTTTTGGCTTCTCGCTTAGGACCATCACATAGCATGTGGTTGTTAACTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCTATATCTTTCGCTGCAGCATGTCGTTTGTTATTTTTCCATCAGCAGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

mRNA sequence

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Coding sequence (CDS)

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Protein sequence

MKRQTIHQLVTINTMDAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISGCHEIWPHSQRFKSCVERYQSIKRISKVLLTTEF
Homology
[Close]
BLAST of MELO3C033191 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 59
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C033191 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 58
            ARSVVSTNDVILNRSCRDMG     V+A Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPIS 1036

[Close]
BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 59
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 58
            ARSVVSTNDVILNRSCRDMG     V+A Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPIS 1036

The following BLAST results are available for this feature:
BLAST of MELO3C033191 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045355.17.0e-1186.05retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0041137.11.2e-0577.50putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033191 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVE03.4e-1186.05Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7THN25.6e-0677.50Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033191.1MELO3C033191.1mRNA