MELO3C033171.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033171.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 8901622 .. 8903159 (-)
RNA-Seq ExpressionMELO3C033171.jh1
SyntenyMELO3C033171.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATTATTTTGGAAAATAGAAAGTTGTAAAAAGAAAATCTTAAATTTAAAAACTTATCGAAATGGACAAAGAAAGGGAGAAAAAGATAAAAGGCTTTGAAAATAAATCACGTACAGACAGGAGCAGAATAACATAAATTACAACCTGGCCCTGATTTCTTTTTCATCTTCAATCAAATCATCGCAGGGTCCAGACACGGCACTCAACGACGACCACAAAGATGATGATGATGATGATGATGATTAAATCATGTAAAGATCCAACGGTCACAAATGAGACACGACCAAACCCATCCGATAAAAGAAATTAACTTAACAAAACCAAATACACCAGATTAAAAAAGAAAAGAAAAGAAGTGGCCGCCGTCGCCGCCGCATCCGCCGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTTGACTTAGTAGTCGGTGGTTGGGAGTTGCTCGTGGGAGTTGGAAATGAAGATGAATTCGTAGATGAGACCAGCAAGGCCACCACCGATCAAAGGTCCGGCCCAGTAGACCCAGTGGCTTTCCCATGACCAGCTGACGACTGATGGGCCGAATGCCACGGCGGGGTTCATGGAGGCTCCGGTGAATGCTCCGCCGGCCAAAATGTTGGCTCCGACGATGAAACCGATTGCGATGGGTGCAATTGTTCCCAAACTGCCCTTCTTGGGATCCACTGCGGTTGCGTACACCGTGTACACCAAGCCGAATGTCATCACGATCTCGAAAACGAAGGCGTTTAGTTCACCAACTCCTGCTGATAGACCGAAGCTCCCGGTGGGCTGTCATGCACATGAACATCACCCCCAATTAAATTAATAAAAGTGATTTTCTCCCCAAGTAACGGAAATAACGACATCTTACCCTAATATTTAGACTCTATCTAATCCCATAAAATTCCAAAAGAAAAAAAAAATAGCATTTGATGAGATTGCTGTGGCTCTTTCGTAATAATTTTTTAGTTTAGATTTAAAAATATAAATGTGTCTATTAAATACAAATTCGAGATAAATTCTAGTAAAGTCTTTAATAATTACTTGCATCTTTGAAAACTTTTGATTTTAATGTCTAGAAGTCTCACATTGTGTCAATATCATTCAATAATATTTAATTTGTATTTTGTGGTGAATTTAATAAAAATTTAACGATTTATTTTATTTTCTTGGGTGTGCTTTAATTTTTCTTCCCAAATAAAAAAATTTACATAATATCTTTTTCAAATCAACATTGTGTGATAGTAGAGAATCAACCCTATTAATTTTCTTTAGAAAACATTATATGTTAAGCTGAATTCTTTTTTTAGGTAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACGGATCCGAGGAGTTGAGCAATCCAGTAGATGATACCACGTAGGAGGGTGATGTTACCGCCAACGAAGGCACCAAAGGTAACGGCGGGGTTAACATGGCCACCAGAGATGTTAGCGCCAACGGAGACGGCAACGAAAAGAGCAAAGGCATGGGCGATGGAGGCGGAGATGAGACCGGCTG

mRNA sequence

GCATTATTTTGGAAAATAGAAAGTTGTAAAAAGAAAATCTTAAATTTAAAAACTTATCGAAATGGACAAAGAAAGGGAGAAAAAGATAAAAGGCTTTGAAAATAAATCACGTACAGACAGGAGCAGAATAACATAAATTACAACCTGGCCCTGATTTCTTTTTCATCTTCAATCAAATCATCGCAGGGTCCAGACACGGCACTCAACGACGACCACAAAGATGATGATGATGATGATGATGATTAAATCATGTAAAGATCCAACGGTCACAAATGAGACACGACCAAACCCATCCGATAAAAGAAATTAACTTAACAAAACCAAATACACCAGATTAAAAAAGAAAAGAAAAGAAGTGGCCGCCGTCGCCGCCGCATCCGCCGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTTGACTTAGTAGTCGGTGGTTGGGAGTTGCTCGTGGGAGTTGGAAATGAAGATGAATTCGTAGATGAGACCAGCAAGGCCACCACCGATCAAAGGTCCGGCCCAGTAGACCCAGTGGCTTTCCCATGACCAGCTGACGACTGATGGGCCGAATGCCACGGCGGGGTTCATGGAGGCTCCGGTGAATGCTCCGCCGGCCAAAATGTTGGCTCCGACGATGAAACCGATTGCGATGGGTGCAATTGTTCCCAAACTGCCCTTCTTGGGATCCACTGCGGTTGCGTACACCGTGTACACCAAGCCGAATGTCATCACGATCTCGAAAACGAAGGCGTTTAGTTCACCAACTCCTGCTGATAGACCGAAGCTCCCGGTAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACGGATCCGAGGAGTTGAGCAATCCAGTAGATGATACCACGTAGGAGGGTGATGTTACCGCCAACGAAGGCACCAAAGGTAACGGCGGGGTTAACATGGCCACCAGAGATGTTAGCGCCAACGGAGACGGCAACGAAAAGAGCAAAGGCATGGGCGATGGAGGCGGAGATGAGACCGGCTG

Coding sequence (CDS)

ATGGAGGCTCCGGTGAATGCTCCGCCGGCCAAAATGTTGGCTCCGACGATGAAACCGATTGCGATGGGTGCAATTGTTCCCAAACTGCCCTTCTTGGGATCCACTGCGGTTGCGTACACCGTGTACACCAAGCCGAATGTCATCACGATCTCGAAAACGAAGGCGTTTAGTTCACCAACTCCTGCTGATAGACCGAAGCTCCCGGTAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACGGATCCGAGGAGTTGA

Protein sequence

MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPTPADRPKLPVKLTKPVTNLRSKQATTDPRS
Homology
BLAST of MELO3C033171.jh1 vs. NCBI nr
Match: KAF2307463.1 (hypothetical protein GH714_028892 [Hevea brasiliensis])

HSP 1 Score: 97.8 bits (242), Expect = 1.15e-22
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 1   MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
           ++AP NAPPAK+ APTMKPIAMGAI+PKLPF GS AVAYTVYT P VITISKT AF +PT
Sbjct: 64  IDAPSNAPPAKIFAPTMKPIAMGAIIPKLPFFGSMAVAYTVYTSPKVITISKTNAFHTPT 123

Query: 61  PADRPK 66
           P +  K
Sbjct: 124 PEESAK 129

BLAST of MELO3C033171.jh1 vs. NCBI nr
Match: ACN30700.1 (unknown [Zea mays])

HSP 1 Score: 96.3 bits (238), Expect = 2.36e-22
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
          M+AP  APP +MLAPTMKP+AMGA+VP+LPF GSTAVAYTVYT P VITIS T A  + T
Sbjct: 1  MDAPSKAPPTRMLAPTMKPMAMGAMVPRLPFFGSTAVAYTVYTSPKVITISSTSASHTDT 60

Query: 61 PADRPKLPVKLTKPVTNLRSKQATTDPRS 89
          P   PK+PV    PV     K AT DP S
Sbjct: 61 PVS-PKVPVACP-PVEKRSRKHATVDPSS 87

BLAST of MELO3C033171.jh1 vs. NCBI nr
Match: KAF9850465.1 (hypothetical protein H0E87_014900, partial [Populus deltoides])

HSP 1 Score: 79.7 bits (195), Expect = 1.29e-17
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 17 MKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPTPADRPK 66
          MKPIA+GA++PKLPF GSTAVAYTVYT P VITIS+TKAF +PTP DR K
Sbjct: 1  MKPIAIGAMIPKLPFFGSTAVAYTVYTSPKVITISRTKAFQTPTPEDRAK 50

BLAST of MELO3C033171.jh1 vs. NCBI nr
Match: KAB8096365.1 (hypothetical protein EE612_024786 [Oryza sativa] >BAS90378.1 Os04g0550866 [Oryza sativa Japonica Group])

HSP 1 Score: 74.3 bits (181), Expect = 1.81e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
          ME P+  P A+MLAPTMKP+AMGA VP+ PF GS AVAYTVYT  NVITIS T    S  
Sbjct: 1  MELPLKGPAARMLAPTMKPMAMGATVPREPFFGSAAVAYTVYTSANVITISITMPSISLI 60

Query: 61 PA 62
          PA
Sbjct: 61 PA 62

BLAST of MELO3C033171.jh1 vs. NCBI nr
Match: KAB8090180.1 (hypothetical protein EE612_015291 [Oryza sativa] >BAS82278.1 Os03g0146200 [Oryza sativa Japonica Group])

HSP 1 Score: 71.2 bits (173), Expect = 4.26e-14
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 1  MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTV 41
          MEAP NAPP +M APTMKP+AMGA+VP+LPFLGSTAVAYTV
Sbjct: 28 MEAPSNAPPTRMFAPTMKPMAMGAMVPRLPFLGSTAVAYTV 68

BLAST of MELO3C033171.jh1 vs. ExPASy TrEMBL
Match: A0A0A9C6C8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 6.76e-28
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 1   MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
           M+AP  APPA+MLAPTMKP+AMGA+ P+ PFLGSTAVAYTVYT P V+TIS T AF +PT
Sbjct: 32  MDAPSKAPPARMLAPTMKPMAMGAMTPRSPFLGSTAVAYTVYTSPKVMTISNTTAFHAPT 91

Query: 61  PADRPKLPVKLTKPVTNLRSKQATTDPRS 89
           PA+  K P   + PV  LR +QATT+P S
Sbjct: 92  PAESEKAPT-ASPPVAILRRRQATTEPSS 119

BLAST of MELO3C033171.jh1 vs. ExPASy TrEMBL
Match: A0A6A6M528 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_028892 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.59e-23
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 1   MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
           ++AP NAPPAK+ APTMKPIAMGAI+PKLPF GS AVAYTVYT P VITISKT AF +PT
Sbjct: 64  IDAPSNAPPAKIFAPTMKPIAMGAIIPKLPFFGSMAVAYTVYTSPKVITISKTNAFHTPT 123

Query: 61  PADRPK 66
           P +  K
Sbjct: 124 PEESAK 129

BLAST of MELO3C033171.jh1 vs. ExPASy TrEMBL
Match: C0P955 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.14e-22
Identity = 56/89 (62.92%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 1  MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
          M+AP  APP +MLAPTMKP+AMGA+VP+LPF GSTAVAYTVYT P VITIS T A  + T
Sbjct: 1  MDAPSKAPPTRMLAPTMKPMAMGAMVPRLPFFGSTAVAYTVYTSPKVITISSTSASHTDT 60

Query: 61 PADRPKLPVKLTKPVTNLRSKQATTDPRS 89
          P   PK+PV    PV     K AT DP S
Sbjct: 61 PVS-PKVPVACP-PVEKRSRKHATVDPSS 87

BLAST of MELO3C033171.jh1 vs. ExPASy TrEMBL
Match: A0A6N2K8J0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS40515 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.08e-21
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 12 MLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPTPADRPK 66
          MLAPTMKPIA+GA++PKLPF GSTAVAYTVYT P VITIS+TKAF +PTP DR K
Sbjct: 1  MLAPTMKPIAIGAMIPKLPFFGSTAVAYTVYTSPKVITISRTKAFHTPTPVDREK 55

BLAST of MELO3C033171.jh1 vs. ExPASy TrEMBL
Match: A0A0P0WD37 (Os04g0550866 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0550866 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.78e-15
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MEAPVNAPPAKMLAPTMKPIAMGAIVPKLPFLGSTAVAYTVYTKPNVITISKTKAFSSPT 60
          ME P+  P A+MLAPTMKP+AMGA VP+ PF GS AVAYTVYT  NVITIS T    S  
Sbjct: 1  MELPLKGPAARMLAPTMKPMAMGATVPREPFFGSAAVAYTVYTSANVITISITMPSISLI 60

Query: 61 PA 62
          PA
Sbjct: 61 PA 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF2307463.11.15e-2274.24hypothetical protein GH714_028892 [Hevea brasiliensis][more]
ACN30700.12.36e-2262.92unknown [Zea mays][more]
KAF9850465.11.29e-1778.00hypothetical protein H0E87_014900, partial [Populus deltoides][more]
KAB8096365.11.81e-1466.13hypothetical protein EE612_024786 [Oryza sativa] >BAS90378.1 Os04g0550866 [Oryza... [more]
KAB8090180.14.26e-1482.93hypothetical protein EE612_015291 [Oryza sativa] >BAS82278.1 Os03g0146200 [Oryza... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9C6C86.76e-2865.17Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A6A6M5285.59e-2374.24Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_028892 PE=4 SV=1[more]
C0P9551.14e-2262.92Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A6N2K8J03.08e-2180.00Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS40515 PE=4 SV=1[more]
A0A0P0WD378.78e-1566.13Os04g0550866 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0550866 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033171.jh1.t1MELO3C033171.jh1.t1mRNA