MELO3C033107 (gene) Melon (DHL92) v4

Overview
NameMELO3C033107
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTSA1-like protein
Locationchr07: 12202801 .. 12202989 (-)
RNA-Seq ExpressionMELO3C033107
SyntenyMELO3C033107
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGTTGTTCTAAAGTAAATACGAGTTTCTGAGACTTGACAATATTACTCACGATTCCATGGTCGATCAAGACAAGATTAAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATCAAGGAGTCGAAGGAGATGGAGCGTGAGATTCAAAAA

mRNA sequence

AAGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGTTGTTCTAAAGTAAATACGAGTTTCTGAGACTTGACAATATTACTCACGATTCCATGGTCGATCAAGACAAGATTAAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATCAAGGAGTCGAAGGAGATGGAGCGTGAGATTCAAAAA

Coding sequence (CDS)

ATGGTCGATCAAGACAAGATTAAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATCAAGGAGTCGAAGGAGATGGAGCGTGAGATTCAAAAA

Protein sequence

MVDQDKIKVDPKGFGKWKKTIKESKEMEREIQK
Homology
[Close]
BLAST of MELO3C033107 vs. NCBI nr
Match: KAA0048522.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MVDQDKIKVDPKGFGKWKKTIKESKEME 29
          MVDQDKI+VDPKGFGKWKKTI+ESKEME
Sbjct: 32 MVDQDKIEVDPKGFGKWKKTIEESKEME 59

[Close]
BLAST of MELO3C033107 vs. NCBI nr
Match: TYK28313.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MVDQDKIKVDPKGFGKWKKTIKESKEME 29
          MVDQDKI+VDPKGFGKWKKTI+ESKEME
Sbjct: 32 MVDQDKIEVDPKGFGKWKKTIEESKEME 59

[Close]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match: A0A5D3DX93 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001380 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-05
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MVDQDKIKVDPKGFGKWKKTIKESKEME 29
          MVDQDKI+VDPKGFGKWKKTI+ESKEME
Sbjct: 32 MVDQDKIEVDPKGFGKWKKTIEESKEME 59

[Close]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match: A0A5A7TYB0 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001430 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-05
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MVDQDKIKVDPKGFGKWKKTIKESKEME 29
          MVDQDKI+VDPKGFGKWKKTI+ESKEME
Sbjct: 32 MVDQDKIEVDPKGFGKWKKTIEESKEME 59

[Close]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match: A0A5D3CXC0 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004140 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MVDQDKIKVDPKGFGKWKKTIKESKEMEREIQK 34
           MV QDK++VDPKGF KWKK+ +E KEMEREIQ+
Sbjct: 89  MVQQDKVEVDPKGFEKWKKSFEELKEMEREIQQ 121

[Close]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match: A0A5A7U4A3 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001270 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 3  DQDKIKVDPKGFGKWKKTIKESKEMEREI 32
          DQDKIK+DPKGFGKWK+TI+E KEME EI
Sbjct: 25 DQDKIKLDPKGFGKWKETIEELKEMETEI 53

[Close]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match: A0A5A7TPQ9 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001710 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-04
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MVDQDKIKVDPKGFGKWKKTIKESKEMEREIQK 34
           MV QDK++VDPKGF KWKK+ +E KEMEREIQ+
Sbjct: 89  MVQQDKVEVDPKGFEKWKKSFEELKEMEREIQQ 121

The following BLAST results are available for this feature:
BLAST of MELO3C033107 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048522.18.0e-0592.86TSA1-like protein [Cucumis melo var. makuwa][more]
TYK28313.18.0e-0592.86TSA1-like protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033107 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DX933.9e-0592.86TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A5A7TYB03.9e-0592.86TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001... [more]
A0A5D3CXC07.3e-0472.73TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004... [more]
A0A5A7U4A37.3e-0482.76TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00... [more]
A0A5A7TPQ97.3e-0472.73TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001... [more]
BLAST of MELO3C033107 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033107.1MELO3C033107.1mRNA