MELO3C032993.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032993.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor bHLH36-like
Locationchr08: 13193190 .. 13193495 (+)
RNA-Seq ExpressionMELO3C032993.jh1
SyntenyMELO3C032993.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAATGCATTGTTGAGTTAGGGAGAATAAGGGAGAGACAAAAAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGGAAAAGATAAACAGAGGGAGAAGAAACAAAAAAAAGAAAGATCAAGAACTCACCGGCACCGATATGGGTCTCCTCGCTGTGGGTCTCTGTTGCCGAAAAGAAAGGAAGTGGAGATGAGAAGAATGTGGTTAAGGTTGGGGTTTTTGTCGTGCGTCGTTCGTCGTTCGTGA

mRNA sequence

ATGGACAAATGCATTGTTGAGTTAGGGAGAATAAGGGAGAGACAAAAAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGGAAAAGATAAACAGAGGGAGAAGAAACAAAAAAAAGAAAGATCAAGAACTCACCGGCACCGATATGGGTCTCCTCGCTGTGGGTCTCTGTTGCCGAAAAGAAAGGAAGTGGAGATGAGAAGAATGTGGTTAAGGTTGGGGTTTTTGTCGTGCGTCGTTCGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAATGCATTGTTGAGTTAGGGAGAATAAGGGAGAGACAAAAAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGGAAAAGATAAACAGAGGGAGAAGAAACAAAAAAAAGAAAGATCAAGAACTCACCGGCACCGATATGGGTCTCCTCGCTGTGGGTCTCTGTTGCCGAAAAGAAAGGAAGTGGAGATGAGAAGAATGTGGTTAAGGTTGGGGTTTTTGTCGTGCGTCGTTCGTCGTTCGTGA

Protein sequence

MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKERSRTHRHRYGSPRCGSLLPKRKEVEMRRMWLRLGFLSCVVRRS
Homology
BLAST of MELO3C032993.jh1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.64e-32
Identity = 68/108 (62.96%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKERS 60
           MDK +VELGR RERQ+RQEI ALYM LR LLPLEFIKVICGTVHRG+DKQREKK+KK+  
Sbjct: 1   MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61  R----------THRHRYGSPRCGSLLPKRKEVEMRRMWLRLGFLSCVV 98
                         HRYGSP     L +RK++EMRR+ LRLGF  CV+
Sbjct: 61  ELTGDDIGLFVVGLHRYGSP-----LSRRKDIEMRRIGLRLGFSLCVI 103

BLAST of MELO3C032993.jh1 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.71e-23
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKE 58
          MDK IVELGR RERQ+RQEIGALYMSLRTLLPLEFIKVI GT+HRG+DK REKK+KK+
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKK 58

BLAST of MELO3C032993.jh1 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.02e-16
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKE 58
          MDK +V+L R RERQ+RQEIGALYM++RTLL LEFIKVICG VHR +DK REKK+KK+
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKK 58

BLAST of MELO3C032993.jh1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.56e-11
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKV 38
          MDK +VELGR RERQ+RQEI ALYMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C032993.jh1 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 2.52e-05
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 2   DKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIK 37
           D  I  + R RERQ+RQE+GALYMSLRTLLPLEFIK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO3C032993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 1.28e-32
Identity = 68/108 (62.96%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKERS 60
           MDK +VELGR RERQ+RQEI ALYM LR LLPLEFIKVICGTVHRG+DKQREKK+KK+  
Sbjct: 1   MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61  R----------THRHRYGSPRCGSLLPKRKEVEMRRMWLRLGFLSCVV 98
                         HRYGSP     L +RK++EMRR+ LRLGF  CV+
Sbjct: 61  ELTGDDIGLFVVGLHRYGSP-----LSRRKDIEMRRIGLRLGFSLCVI 103

BLAST of MELO3C032993.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.80e-23
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKE 58
          MDK IVELGR RERQ+RQEIGALYMSLRTLLPLEFIKVI GT+HRG+DK REKK+KK+
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKK 58

BLAST of MELO3C032993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.93e-17
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKVICGTVHRGKDKQREKKQKKE 58
          MDK +V+L R RERQ+RQEIGALYM++RTLL LEFIKVICG VHR +DK REKK+KK+
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKK 58

BLAST of MELO3C032993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.55e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIKV 38
          MDK +VELGR RERQ+RQEI ALYMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C032993.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HTL2 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.22e-05
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0

Query: 2   DKCIVELGRIRERQKRQEIGALYMSLRTLLPLEFIK 37
           D  I  + R RERQ+RQE+GALYMSLRTLLPLEFIK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033316.12.64e-3262.96transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
TYK30150.13.71e-2384.48transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0065871.11.02e-1674.14retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0044825.11.56e-1186.84transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
XP_022967981.12.52e-0575.00transcription factor bHLH118-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7STJ51.28e-3262.96Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3E3K51.80e-2384.48Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VJK94.93e-1774.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TTV07.55e-1286.84Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1HTL21.22e-0575.00transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032993.jh1.t1MELO3C032993.jh1.t1mRNA