MELO3C032954 (gene) Melon (DHL92) v4

Overview
NameMELO3C032954
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr08: 10334529 .. 10334798 (+)
RNA-Seq ExpressionMELO3C032954
SyntenyMELO3C032954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

mRNA sequence

ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Coding sequence (CDS)

ATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Protein sequence

MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNILLQNNV
Homology
[Close]
BLAST of MELO3C032954 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 4.0e-35
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           EVIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTKL QILFRS
Sbjct: 477 EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTKLMQILFRS 536

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 90
           LEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 537 LEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]
BLAST of MELO3C032954 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 5.8e-34
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 90
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]
BLAST of MELO3C032954 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 1   MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILF 60
           MVEVI S  EFGN+QLK I DWPKEK   E+E+R +VVKQLQDIP+LRSQ R KL QILF
Sbjct: 175 MVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILF 234

Query: 61  RSLEAIEGFLSIPTELKLEYCNILLQNNV 90
           RS+EAIEGFLSIPT+LKLEYCNILL+NNV
Sbjct: 235 RSVEAIEGFLSIPTKLKLEYCNILLENNV 263

[Close]
BLAST of MELO3C032954 vs. NCBI nr
Match: KAA0063430.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           E IRS+MEFGN+QLKAIA+WPKEK   E+E+  +VVKQLQDIPEL+SQ R KL QILFRS
Sbjct: 345 EYIRSLMEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRS 404

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 90
           +E IEGFLSIP ELKLEYCNILLQNNV
Sbjct: 405 VETIEGFLSIPLELKLEYCNILLQNNV 431

[Close]
BLAST of MELO3C032954 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-28
Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVI+S +EFGN+QLKAIA+WPKEK   E+E+RA+V+KQLQDIPEL+S+ R KL QILFR
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQN 88
           S+EAIEGFLSIPTE KLEYCNILLQN
Sbjct: 472 SVEAIEGFLSIPTERKLEYCNILLQN 497

[Close]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           EVIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTKL QILFRS
Sbjct: 477 EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTKLMQILFRS 536

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 90
           LEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 537 LEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.8e-34
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 90
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.8e-34
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 2   VEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFR 61
           VEVIRSVMEFGNEQLKAIADWPKEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 62  SLEAIEGFLSIPTELKLEYCNILLQNNV 90
           SLEAIEGFLSIPTELKLEYCNILLQN V
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQNIV 306

[Close]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 1   MVEVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILF 60
           MVEVI S  EFGN+QLK I DWPKEK   E+E+R +VVKQLQDIP+LRSQ R KL QILF
Sbjct: 175 MVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILF 234

Query: 61  RSLEAIEGFLSIPTELKLEYCNILLQNNV 90
           RS+EAIEGFLSIPT+LKLEYCNILL+NNV
Sbjct: 235 RSVEAIEGFLSIPTKLKLEYCNILLENNV 263

[Close]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match: A0A5A7V8C5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00690 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 3   EVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRS 62
           E IRS+MEFGN+QLKAIA+WPKEK   E+E+  +VVKQLQDIPEL+SQ R KL QILFRS
Sbjct: 345 EYIRSLMEFGNDQLKAIANWPKEKRATEVELCVEVVKQLQDIPELQSQDRAKLMQILFRS 404

Query: 63  LEAIEGFLSIPTELKLEYCNILLQNNV 90
           +E IEGFLSIP ELKLEYCNILLQNNV
Sbjct: 405 VETIEGFLSIPLELKLEYCNILLQNNV 431

The following BLAST results are available for this feature:
BLAST of MELO3C032954 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062747.14.0e-3594.25retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
XP_008441954.15.8e-3490.91PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0031678.11.5e-2977.53retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0063430.12.1e-2878.16putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nucleas... [more]
KAA0033290.13.6e-2877.91putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
BLAST of MELO3C032954 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DG221.9e-3594.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H72.8e-3490.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L32.8e-3490.91uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3BZU37.1e-3077.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V8C51.0e-2878.16Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C032954 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032954.1MELO3C032954.1mRNA