MELO3C032941 (gene) Melon (DHL92) v4

Overview
NameMELO3C032941
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPMD domain-containing protein
Locationchr08: 9389898 .. 9390209 (+)
RNA-Seq ExpressionMELO3C032941
SyntenyMELO3C032941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGGCGGAAGGGGTTCAAGTGTTATGGAGTCCCTGATGTTCCACTACTGGTTTGCACATTTTCCTTTCTTATTTCATTTGTTCATCTTCTTAATGAATGATTTATTAATTGTTTACTTCTGTAGTCACCTTTGAACGATCATCTTGAAGGACTTATAGAGCTAGGCAGCAATGAATCTTTGACGACGCCTCATGCAGTTGATTCAGCCATTGAGAAAGTTGGTACCACGAAGATTCCCTTGCTATACCAGCTAAATAGTCGTTACGTCTATCTGTTCTTCTCGAGGAGATTCGTCGAGACTAGATGA

mRNA sequence

ATGATCGGGCGGAAGGGGTTCAAGTGTTATGGAGTCCCTGATGTTCCACTACTGTCACCTTTGAACGATCATCTTGAAGGACTTATAGAGCTAGGCAGCAATGAATCTTTGACGACGCCTCATGCAGTTGATTCAGCCATTGAGAAAGTTGGTACCACGAAGATTCCCTTGCTATACCAGCTAAATAGTCGTTACGTCTATCTGTTCTTCTCGAGGAGATTCGTCGAGACTAGATGA

Coding sequence (CDS)

ATGATCGGGCGGAAGGGGTTCAAGTGTTATGGAGTCCCTGATGTTCCACTACTGTCACCTTTGAACGATCATCTTGAAGGACTTATAGAGCTAGGCAGCAATGAATCTTTGACGACGCCTCATGCAGTTGATTCAGCCATTGAGAAAGTTGGTACCACGAAGATTCCCTTGCTATACCAGCTAAATAGTCGTTACGTCTATCTGTTCTTCTCGAGGAGATTCGTCGAGACTAGATGA

Protein sequence

MIGRKGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQLNSRYVYLFFSRRFVETR
Homology
BLAST of MELO3C032941 vs. NCBI nr
Match: TYK07303.1 (hypothetical protein E5676_scaffold202G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0

Query: 1  MIGRKGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQ 60
          MI RKGFKCYGVPDVPLLSPLNDHLEGLIELG NESLTTPHAVDSAIEKVGTTKIPLLYQ
Sbjct: 1  MIERKGFKCYGVPDVPLLSPLNDHLEGLIELGCNESLTTPHAVDSAIEKVGTTKIPLLYQ 60

Query: 61 LNSRYVYLFFSRRFVETR 79
          LNS YVYLFFSRRFVETR
Sbjct: 61 LNSPYVYLFFSRRFVETR 78

BLAST of MELO3C032941 vs. NCBI nr
Match: KAA0059873.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK24824.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 2   IGRKGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQL 61
           +  KG    GVP++P LSPLNDHLEGLIEL SNESLT  HAVDS  E+VGT ++  L Q 
Sbjct: 335 LDEKGSSALGVPNIPPLSPLNDHLEGLIELASNESLTGSHAVDSVFEEVGTRRLSPLNQP 394

Query: 62  NSRYVYLFFSRRFVE 77
           NS YV+L F RRF+E
Sbjct: 395 NSPYVHLLFPRRFIE 409

BLAST of MELO3C032941 vs. NCBI nr
Match: KAA0059891.1 (hypothetical protein E6C27_scaffold108G001850 [Cucumis melo var. makuwa] >TYK24841.1 hypothetical protein E5676_scaffold184G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-14
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 5  KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQ 61
          +G    GVPD+PLLSPLNDHLEGLIELGS+ESLT PHAVDS IE+VGT+K P+  Q
Sbjct: 42 RGSSALGVPDIPLLSPLNDHLEGLIELGSDESLTGPHAVDSVIEEVGTSKTPVSKQ 97

BLAST of MELO3C032941 vs. NCBI nr
Match: KAA0055866.1 (hypothetical protein E6C27_scaffold104G00440 [Cucumis melo var. makuwa] >TYK24090.1 hypothetical protein E5676_scaffold943G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 4.9e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 5   KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPL 58
           +G    GVPDVPLLSPLNDHLEGLIELGS++SL  PHAVDS  EKVGT K P+
Sbjct: 97  RGLSALGVPDVPLLSPLNDHLEGLIELGSDKSLMGPHAVDSTFEKVGTLKTPV 149

BLAST of MELO3C032941 vs. NCBI nr
Match: KAA0059654.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 5   KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPL 58
           +G    GVPDVP LSPLNDHLEGLIEL S+ESLT PHAVDSA E+VGT+K P+
Sbjct: 420 RGLSALGVPDVPPLSPLNDHLEGLIELDSDESLTGPHAVDSAFEEVGTSKTPV 472

BLAST of MELO3C032941 vs. ExPASy TrEMBL
Match: A0A5D3C5W6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00140 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0

Query: 1  MIGRKGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQ 60
          MI RKGFKCYGVPDVPLLSPLNDHLEGLIELG NESLTTPHAVDSAIEKVGTTKIPLLYQ
Sbjct: 1  MIERKGFKCYGVPDVPLLSPLNDHLEGLIELGCNESLTTPHAVDSAIEKVGTTKIPLLYQ 60

Query: 61 LNSRYVYLFFSRRFVETR 79
          LNS YVYLFFSRRFVETR
Sbjct: 61 LNSPYVYLFFSRRFVETR 78

BLAST of MELO3C032941 vs. ExPASy TrEMBL
Match: A0A5A7UVA2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00770 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 2   IGRKGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQL 61
           +  KG    GVP++P LSPLNDHLEGLIEL SNESLT  HAVDS  E+VGT ++  L Q 
Sbjct: 335 LDEKGSSALGVPNIPPLSPLNDHLEGLIELASNESLTGSHAVDSVFEEVGTRRLSPLNQP 394

Query: 62  NSRYVYLFFSRRFVE 77
           NS YV+L F RRF+E
Sbjct: 395 NSPYVHLLFPRRFIE 409

BLAST of MELO3C032941 vs. ExPASy TrEMBL
Match: A0A5A7V2C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001020 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 5  KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPLLYQ 61
          +G    GVPD+PLLSPLNDHLEGLIELGS+ESLT PHAVDS IE+VGT+K P+  Q
Sbjct: 42 RGSSALGVPDIPLLSPLNDHLEGLIELGSDESLTGPHAVDSVIEEVGTSKTPVSKQ 97

BLAST of MELO3C032941 vs. ExPASy TrEMBL
Match: A0A5A7UNK2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00620 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 5   KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPL 58
           +G    GVPDVPLLSPLNDHLEGLIELGS++SL  PHAVDS  EKVGT K P+
Sbjct: 97  RGLSALGVPDVPLLSPLNDHLEGLIELGSDKSLMGPHAVDSTFEKVGTLKTPV 149

BLAST of MELO3C032941 vs. ExPASy TrEMBL
Match: A0A5A7UX29 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00930 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-13
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 5   KGFKCYGVPDVPLLSPLNDHLEGLIELGSNESLTTPHAVDSAIEKVGTTKIPL 58
           +G    GVPDVP LSPLNDHLEGLIEL S+ESLT PHAVDSA E+VGT+K P+
Sbjct: 420 RGLSALGVPDVPPLSPLNDHLEGLIELDSDESLTGPHAVDSAFEEVGTSKTPV 472

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07303.13.9e-3496.15hypothetical protein E5676_scaffold202G00140 [Cucumis melo var. makuwa][more]
KAA0059873.11.3e-1662.67putative mitochondrial protein [Cucumis melo var. makuwa] >TYK24824.1 putative m... [more]
KAA0059891.13.4e-1473.21hypothetical protein E6C27_scaffold108G001850 [Cucumis melo var. makuwa] >TYK248... [more]
KAA0055866.14.9e-1373.58hypothetical protein E6C27_scaffold104G00440 [Cucumis melo var. makuwa] >TYK2409... [more]
KAA0059654.18.4e-1373.58putative mitochondrial protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C5W61.9e-3496.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UVA26.1e-1762.67Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7V2C01.7e-1473.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UNK22.4e-1373.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UX294.1e-1373.58Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032941.1MELO3C032941.1mRNA