MELO3C032930 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032930
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr11: 6698905 .. 6699753 (+)
RNA-Seq Expression	MELO3C032930
Synteny	MELO3C032930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAGCTTAATGCCGAAGCAAAGAGCAAAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCACATTTCTGGGACCCTATGTTAAAGTGTTTCATGTTCAACACGTTCGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACTGAGGGAATAAGTTGTACATCTATGATTGAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGCTAAAGAAACAGATGAAGACAAAAGAAGGTTGGAATTGTATTCCTATCAATTATCTCATCAATCTTGTGCGTGGTTGTTTATCAGGGAAGAAGTTTTTTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAACGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGATTTGGGGTTTGGATGCAGTTTTTCAGCCATTTAACGATAGTAGAAGCAATTTGG

mRNA sequence

TTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAGTTAAAAAGTTTATGGGAAAGCTTAATGCCGAAGCAAAGAGCAAAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCACATTTCTGGGACCCTATGTTAAAGTGTTTCATGTTCAACACGTTCGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACTGAGGGAATAAGTTGTACATCTATGATTGAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGCTAAAGAAACAGATGAAGACAAAAGAAGGTTGGAATTGTATTCCTATCAATTATCTCATCAATCTTGTGCGTGGTTGTTTATCAGGGAAGAAGTTTTTTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAACGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGATTTGGGGTTTGGATGCAGTTTTTCAGCCATTTAACGATAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGATTTGGGGTTTGGATGCAGTTTTTCAGCCATTTAA

Protein sequence

MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIREFNSAHWDPKDPDLGFGCSFSAI

Homology

[Close]

BLAST of MELO3C032930 vs. NCBI nr
Match: KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 9.1e-34
Identity = 68/79 (86.08%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           MAETFRSLNHC+IQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKFSS WN TRNTIRE
Sbjct: 238 MAETFRSLNHCQIQGKGKFFSCAPMLFIWISSHLRYPNNFGYPQIKFSSPWNKTRNTIRE 297

Query: 61  FNSAHWDPKDPDLGFGCSF 80
           FNSAHWDPKDP+ G    F
Sbjct: 298 FNSAHWDPKDPEFGVWMQF 316

[Close]

BLAST of MELO3C032930 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKF+S WN TRNTIRE
Sbjct: 238 MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPNNFGYPQIKFNSPWNKTRNTIRE 297

Query: 61  FNSAHWDPKDPDLG 75
           FNSAHWDPKDP+ G
Sbjct: 298 FNSAHWDPKDPEFG 311

[Close]

BLAST of MELO3C032930 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.0e-33
Identity = 68/79 (86.08%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           M ETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKFSS WNNTRNTIRE
Sbjct: 124 MTETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPNNFGYLQIKFSSPWNNTRNTIRE 183

Query: 61  FNSAHWDPKDPDLGFGCSF 80
           FNSAHWDPKD + G    F
Sbjct: 184 FNSAHWDPKDTEFGVWMQF 202

[Close]

BLAST of MELO3C032930 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           +AETFRSLN+CR +G+GK   C P+L+IWI SH+++P  F   ++ FSS WN  RNTI E
Sbjct: 204 LAETFRSLNYCRNKGEGKLNCCVPLLYIWIHSHIKFPAEFRCPRLDFSSPWNLMRNTISE 263

Query: 61  FNSAHWDPKDPDLGFGCSFSA 82
           F  A WDP  P      SF A
Sbjct: 264 FGMAVWDPTYPRKEAWLSFFA 284

[Close]

BLAST of MELO3C032930 vs. NCBI nr
Match: KAA0037618.1 (uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           +AETFRSLN+CR +G+GK   C P+L+IWI SH+++P  F   ++ FSS WN  RNTI E
Sbjct: 54  LAETFRSLNYCRNKGEGKLNCCVPLLYIWIHSHIKFPAEFRCPRLDFSSPWNLMRNTISE 113

Query: 61  FNSAHWDPKDPDLGFGCSFSA 82
           F  A WDP  P      SF A
Sbjct: 114 FGMAVWDPTYPRKEAWLSFFA 134

[Close]

BLAST of MELO3C032930 vs. ExPASy TrEMBL
Match: A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 68/79 (86.08%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           MAETFRSLNHC+IQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKFSS WN TRNTIRE
Sbjct: 238 MAETFRSLNHCQIQGKGKFFSCAPMLFIWISSHLRYPNNFGYPQIKFSSPWNKTRNTIRE 297

Query: 61  FNSAHWDPKDPDLGFGCSF 80
           FNSAHWDPKDP+ G    F
Sbjct: 298 FNSAHWDPKDPEFGVWMQF 316

[Close]

BLAST of MELO3C032930 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKF+S WN TRNTIRE
Sbjct: 238 MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPNNFGYPQIKFNSPWNKTRNTIRE 297

Query: 61  FNSAHWDPKDPDLG 75
           FNSAHWDPKDP+ G
Sbjct: 298 FNSAHWDPKDPEFG 311

[Close]

BLAST of MELO3C032930 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.8e-34
Identity = 68/79 (86.08%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           M ETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYP NFGY QIKFSS WNNTRNTIRE
Sbjct: 124 MTETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPNNFGYLQIKFSSPWNNTRNTIRE 183

Query: 61  FNSAHWDPKDPDLGFGCSF 80
           FNSAHWDPKD + G    F
Sbjct: 184 FNSAHWDPKDTEFGVWMQF 202

[Close]

BLAST of MELO3C032930 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.1e-16
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           +AETFRSLN+CR +G+GK   C P+L+IWI SH+++P  F   ++ FSS WN  RNTI E
Sbjct: 204 LAETFRSLNYCRNKGEGKLNCCVPLLYIWIHSHIKFPAEFRCPRLDFSSPWNLMRNTISE 263

Query: 61  FNSAHWDPKDPDLGFGCSFSA 82
           F  A WDP  P      SF A
Sbjct: 264 FGMAVWDPTYPRKEAWLSFFA 284

[Close]

BLAST of MELO3C032930 vs. ExPASy TrEMBL
Match: A0A5A7T494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002790 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.1e-16
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1   MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIRE 60
           +AETFRSLN+CR +G+GK   C P+L+IWI SH+++P  F   ++ FSS WN  RNTI E
Sbjct: 54  LAETFRSLNYCRNKGEGKLNCCVPLLYIWIHSHIKFPAEFRCPRLDFSSPWNLMRNTISE 113

Query: 61  FNSAHWDPKDPDLGFGCSFSA 82
           F  A WDP  P      SF A
Sbjct: 114 FGMAVWDPTYPRKEAWLSFFA 134

The following BLAST results are available for this feature:

BLAST of MELO3C032930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065295.1	9.1e-34	86.08	uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa]	[more]
KAA0033221.1	1.2e-33	90.54	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
TYK16834.1	2.0e-33	86.08	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0036941.1	1.5e-15	51.85	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037618.1	1.5e-15	51.85	uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHI3	4.4e-34	86.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SUT0	5.8e-34	90.54	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5D3D0S2	9.8e-34	86.08	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T5S7	7.1e-16	51.85	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5A7T494	7.1e-16	51.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C032930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032930.1	MELO3C032930.1	mRNA