MELO3C032770 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032770
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr10: 23466015 .. 23467174 (-)
RNA-Seq Expression	MELO3C032770
Synteny	MELO3C032770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGGCTCAGACCTTGTCTATCGCCAAAGTATGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTATTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCACACAACGTGAAAAATCGTGTCATTCTACGAGAGTTCATGCGGTCGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGTCGTCATTCGACTTCATGAAGAGCTTTTGAAAAAACCACAACCAGTGCCTAATGATTGCACAAATCAAAGATGGAGGTAGTTTGACGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTAGTTATGCGTTGCAGAATTGCCTAGGTGCATTAGATGGAACATACATAAAAGTCAACGTTCTAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTAGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGTCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACTAATGGCCTGAAGGTGCCCAAGGGTAACTAACAACGGCATTGTACCTATGAATGCAATTTTTCAATTAACAGCTACGACATTTTAATTGTGCATTGTGATCACAGGCTATTACTACCTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAAGGCTATCACTTGCAAGAATGGTGTGGCCTTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAATATGAAGCATTTGTCTGCTCGTAATGTAATCAAAAGAGCATTAGGTGTCTTGAAGGGTCGAAGGGCGATACTGCGAGGAAAGTCATACTACCCTGTAGAAGTTCAATGTCGTACAATACTCGCATGTTATCTCCTTCACAACCTTATCATGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCCGCTGATGACATACATTACATAGAGACGTCGAATGAGTGGAGTCAATGGAGGGACGACCTTGCAGAAGAAATGTTTACTGATTGGGAGTTGCGTAACCA

mRNA sequence

ATGATTCATGGCTCAGACCTTGTCTATCGCCAAAGTATGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTATTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCACACAACGTGAAAAATCGTGTCATTCTACGAGAGTTCATGCGGTCGGGTGCATTAGATGGAACATACATAAAAGTCAACGTTCTAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTAGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGTCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACTAATGGCCTGAAGGTGCCCAAGGGCTATTACTACCTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGCCAAGGCTATCACTTGCAAGAATGGTGTGGCCTTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAATATGAAGCATTTGTCTGCTCGTAATGTAATCAAAAGAGCATTAGGTGTCTTGAAGGGTCGAAGGGCGATACTGCGAGGAAAGTCATACTACCCTGTAGAAGTTCAATGTCGTACAATACTCGCATGTTATCTCCTTCACAACCTTATCATGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCCGCTGATGACATACATTACATAGAGACGTCGAATGAGTGGAGTCAATGGAGGGACGACCTTGCAGAAGAAATGTTTACTGATTGGGAGTTGCGTAACCA

Coding sequence (CDS)

ATGATTCATGGCTCAGACCTTGTCTATCGCCAAAGTATGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTATTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCACACAACGTGAAAAATCGTGTCATTCTACGAGAGTTCATGCGGTCGGGTGCATTAGATGGAACATACATAAAAGTCAACGTTCTAGCAAGTGATCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTAGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGTCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACTAATGGCCTGA

Protein sequence

MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRVILREFMRSGALDGTYIKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSRLMA

Homology

[Close]

BLAST of MELO3C032770 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 121/132 (91.67%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDL+ RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLICRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRSGALDGTYIKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSA 120
           I REFMRSGALDGTYIKVNV ASD ARYRTRKGEVATNVL VCD KGDFVYVL  WEGSA
Sbjct: 113 IQREFMRSGALDGTYIKVNVPASDHARYRTRKGEVATNVLGVCDRKGDFVYVLADWEGSA 172

Query: 121 ADSRILRDALSR 133
           ADSRILRDALSR
Sbjct: 173 ADSRILRDALSR 184

[Close]

BLAST of MELO3C032770 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 126/178 (70.79%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSRL 134
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSRL
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRL 230

[Close]

BLAST of MELO3C032770 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 125/177 (70.62%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 125/177 (70.62%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54
Identity = 124/177 (70.06%), Postives = 125/177 (70.62%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEG AADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. ExPASy TrEMBL
Match: A0A5A7VL29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00850 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 121/132 (91.67%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDL+ RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLICRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRSGALDGTYIKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSA 120
           I REFMRSGALDGTYIKVNV ASD ARYRTRKGEVATNVL VCD KGDFVYVL  WEGSA
Sbjct: 113 IQREFMRSGALDGTYIKVNVPASDHARYRTRKGEVATNVLGVCDRKGDFVYVLADWEGSA 172

Query: 121 ADSRILRDALSR 133
           ADSRILRDALSR
Sbjct: 173 ADSRILRDALSR 184

[Close]

BLAST of MELO3C032770 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.8e-56
Identity = 126/178 (70.79%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSRL 134
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSRL
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRL 230

[Close]

BLAST of MELO3C032770 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 125/177 (70.62%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 125/177 (70.62%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEGSAADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 124/177 (70.06%), Postives = 125/177 (70.62%), Query Frame = 0


Query: 1   MIHGSDLVYRQSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRV 60
           MIHGSDLV RQS RMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAH+VKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  ILREFMRS---------------------------------------------GALDGTY 120
           I REFMRS                                             GALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           IKVNV ASDRARYRTRKGEVATNVL VCDTKGDFVYVL GWEG AADSRILRDALSR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSR 229

[Close]

BLAST of MELO3C032770 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-12
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 69  GALDGTYIKVNVLASDRARYRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRD 128
           GA+D T+I   V       +R RKG+++ N+L+ C+   +F+YVL GWEGSA DS++L D
Sbjct: 27  GAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLND 86

Query: 129 ALSR 133
           AL+R
Sbjct: 87  ALTR 90

[Close]

BLAST of MELO3C032770 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 46/165 (27.88%), Postives = 69/165 (41.82%), Query Frame = 0


Query: 11  QSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRVILREFMRS-- 70
           ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ HN++ R +   F  S  
Sbjct: 44  ENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGE 103

Query: 71  -----------------------------------------GALDGTYIKVNVLASDRAR 130
                                                    G +D  +I V V   ++  
Sbjct: 104 TISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGP 163

Query: 131 YRTRKGEVATNVLSVCDTKGDFVYVLVGWEGSAADSRILRDALSR 133
           +R   G +  NVL+       F YVL GWEGSA+D ++L  AL+R
Sbjct: 164 FRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTR 208

[Close]

BLAST of MELO3C032770 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 45/171 (26.32%), Postives = 66/171 (38.60%), Query Frame = 0


Query: 11  QSMRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHNVKNRVILREFMRS-- 70
           Q +RM   CF  LC++L+T   L  T  + +EE VAMFL I  HN   R +   F R+  
Sbjct: 68  QLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQE 127

Query: 71  --------------------------------------------------GALDGTYIKV 130
                                                             GA+DGT++ V
Sbjct: 128 TVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCV 187

The following BLAST results are available for this feature:

BLAST of MELO3C032770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068124.1	2.7e-59	91.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065286.1	1.8e-55	70.79	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	5.3e-55	70.62	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	5.3e-55	70.62	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0048361.1	2.6e-54	70.06	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL29	1.3e-59	91.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG29	8.8e-56	70.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	2.6e-55	70.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.6e-55	70.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	1.3e-54	70.06	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C032770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	7.7e-12	46.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	2.9e-11	27.88	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	2.7e-09	26.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 71..128 e-value: 8.7E-7 score: 28.7
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 70..132
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 2..69
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..69
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 70..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032770.1	MELO3C032770.1	mRNA