MELO3C032722 (gene) Melon (DHL92) v4

Overview
NameMELO3C032722
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr07: 13889941 .. 13891762 (-)
RNA-Seq ExpressionMELO3C032722
SyntenyMELO3C032722
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATTCTATGTAAAGGTTTGCATAAGACTGGATCCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATGAACTAACTATTTCAATTATGATGGCTTAGGTAACTTGATCTTAATTCTGAGCTAACTATGAACTTCTATTCCTTCAGTAGTATCCTTAGATCTGCATAGGTGAGGGAAGCTCAACATCGCTGGCCCAATAAGCCTTCCATTTCAGGGGTAAGACCGAGTGGATAGCTAGGGACATAGGGTGCAAGATAGAATTCACTCCTACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAATGACTGAATCCAAGTCTTGAACAAGGGGCCCCACCTTCTCATTGGCCCGAGAAGGATTCTGGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCGGTGGGTCTTAAGGAGCAAGATGTAATCTTGGGAGTAAAACGGTATTTTGACCCAACCAAGATTACGAACAACCTGTGAAGGATTGACTTACCCATTATGGTTATATCAGGTGGATAGAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAATGTTGATTAACTTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTTTCTAGCTCATATGGATTCAACTAAGAACAAGTATGTTAAAGTAATTCGAATTGTTCGAATAAAGATAAAGAGAGAGAAATTGACAAATATATAAGTCGATAAAAATAAACTTTAAGTTTTGTGTTTAAATATGATTTAAATAAATATGAATATAGATTCATATTTAAAAGCTTGAAAAGTTTAGAAAACGGTCAAAAGTCAACATGTTGATTTTGAACTTTGACCGGATTTATTTTCAAATATGATTTGAATTTTCGAGAAATGAATACGGATTCATACTCAGGAGGTTAGAATTAGTCAAGATGGAAAAATTAGTAAAAAGTCAAAAAGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTGACTTAAGTTGGTCAAATGACCAAAATGTCCCTTTGACTAGTTACTTTATTAATTAACGTTAATGGAAAATGTGGCAGCCGATTATGAATTGAAGGCCACTAATTTCATTAAAGAGTTAATGATTTGATTAGATGTTGATAAGATATGAAATAATTTACATGCAATTTGCATGTAAATTTCATATAAAAATTCTCATTACCGAATGAGAAAAGGAGAGAGTTTTTGCTCTGGAAAACACCTAAATGATTGACTCCCATCTCTCTCCAAAAATTCTCTTCGCATAGCCGAGTCCCACAACTCAGTTCTTGGTCCTAGGCATAGTAGGTCAGCCTGGTGGTTGTCCTTGCTCGTGATTTTCAGAAAGAGAAGAAGTCTTGGACCAAAGAAGAAGTTGAGAACTACAAAGGTAAGTACATCATTTACCTTCCTCTCTCTTCGTTTAGGTTCATTCCATGGTAGATGCATGTTAACTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCCTTTATTTTTCGCTGCAGCATGTTTCTATTGTTTGGTTTTTCCATCACTTTATTGAATAGAATATAATTTTAACTACAAACTACGAGTTTTAGACATAAATTCCAACACACGAGACATAAATTTAGTTAAAGAAGCTAGAAACTCAATATTCTTGGATGATCTTGGCTTCAAATACAAACTTGGATTCTAA

mRNA sequence

ATGGATGTGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATTCTATGTAAAGGTGAGGGAAGCTCAACATCGCTGGCCCAATAAGCCTTCCATTTCAGGGCCAGTTAATCTCGAATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTTTCTAGCTCATATGGATTCAACTAAGAACAAGTATGTTAAAGTCAGCCTGGTGGTTGTCCTTGCTCGTGATTTTCAGAAAGAGAAGAAGTCTTGGACCAAAGAAGAAGTTGAGAACTACAAAGAATATAATTTTAACTACAAACTACGAGTTTTAGACATAAATTCCAACACACGAGACATAAATTTAGTTAAAGAAGCTAGAAACTCAATATTCTTGGATGATCTTGGCTTCAAATACAAACTTGGATTCTAA

Coding sequence (CDS)

ATGGATGTGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATTCTATGTAAAGGTGAGGGAAGCTCAACATCGCTGGCCCAATAAGCCTTCCATTTCAGGGCCAGTTAATCTCGAATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTTTCTAGCTCATATGGATTCAACTAAGAACAAGTATGTTAAAGTCAGCCTGGTGGTTGTCCTTGCTCGTGATTTTCAGAAAGAGAAGAAGTCTTGGACCAAAGAAGAAGTTGAGAACTACAAAGAATATAATTTTAACTACAAACTACGAGTTTTAGACATAAATTCCAACACACGAGACATAAATTTAGTTAAAGAAGCTAGAAACTCAATATTCTTGGATGATCTTGGCTTCAAATACAAACTTGGATTCTAA

Protein sequence

MDVVRSVVSTNDVILNRSCRDMGVGAFYVKVREAQHRWPNKPSISGPVNLESLEPMIYRSIRFLAHMDSTKNKYVKVSLVVVLARDFQKEKKSWTKEEVENYKEYNFNYKLRVLDINSNTRDINLVKEARNSIFLDDLGFKYKLGF
Homology
[Close]
BLAST of MELO3C032722 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2   DVVRSVVSTNDVILNRSCRDMGVGAFYVKVREAQHRWPNKPSISG 47
           D  RSV+STNDVILN SCRDMG GA Y  VR AQHRWPNKP I G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASY--VRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C032722 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 3    VVRSVVSTNDVILNRSCRDMGVGAFYVKVREAQHRWPNKPSIS 46
            + RSVVSTNDVILNRSCRDMGV A        Q RWPNKP IS
Sbjct: 1001 LARSVVSTNDVILNRSCRDMGVKA-------VQWRWPNKPPIS 1036

[Close]
BLAST of MELO3C032722 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2   DVVRSVVSTNDVILNRSCRDMGVGAFYVKVREAQHRWPNKPSISG 47
           D  RSV+STNDVILN SCRDMG GA Y  VR AQHRWPNKP I G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASY--VRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C032722 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-05
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 3    VVRSVVSTNDVILNRSCRDMGVGAFYVKVREAQHRWPNKPSIS 46
            + RSVVSTNDVILNRSCRDMGV A        Q RWPNKP IS
Sbjct: 1001 LARSVVSTNDVILNRSCRDMGVKA-------VQWRWPNKPPIS 1036

The following BLAST results are available for this feature:
BLAST of MELO3C032722 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045355.13.1e-0875.56retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0041137.11.2e-0469.77putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032722 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032722 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVE01.5e-0875.56Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7THN25.9e-0569.77Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C032722 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032722.1MELO3C032722.1mRNA