MELO3C032714 (gene) Melon (DHL92) v4

Overview
NameMELO3C032714
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Locationchr07: 13583566 .. 13584102 (-)
RNA-Seq ExpressionMELO3C032714
SyntenyMELO3C032714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTACCTAGCTGAAGTTCCCGACTCCATCTGCTTCTTGGAGTCCCGTCTCGAAGAGATTGCTGAGAAAACTGACACAATCGATGCGGTAGCTGGCCGTGTCGAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTTGACACTCTAGAAGGAAACGTTGGAAGAATTGTTAACTACGAATATGGGGACAGTTTTTCGGGCCTTGTTTCCCACATGGAAGAACGTGCCAATGAGCTAGATAGTTCCCAGAAGACACTCTTAGAGATGATAAACGTCATGTCGGAGGATTTTCGAGTCACCCTCGATGTCATCAGAAATGAAATCGTAGATGTGAACGCGAGACTGAATCTCACAGTGCAAGAGATGCAAAGCCCTTCTGTAGGACAAGAGATGCAAGGGCCCTGGAGAACTATATTTTTGACCTCGAACAACACTTCAGGGCCACGAACAAAGTTACTGAGGAAGTCAAAGTTACACTGGCAATGTTGTACGATAGATACTTGGGATGCCTTAAAGAAAGAACTCCGCTCATAA

mRNA sequence

ATGCTCTACCTAGCTGAAGTTCCCGACTCCATCTGCTTCTTGGAGTCCCGTCTCGAAGAGATTGCTGAGAAAACTGACACAATCGATGCGGTAGCTGGCCGTGTCGAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTTGACACTCTAGAAGGAAACGTTGGAAGAATTGTTAACTACGAATATGGGGACAGTTTTTCGGGCCTTGTTTCCCACATGGAAGAACGTGCCAATGAGCTAGATAGTTCCCAGAAGACACTCTTAGAGATGATAAACGTCATGTCGGAGGATTTTCGAGTCACCCTCGATGTCATCAGAAATGAAATCGTAGATGTGAACGCGAGACTGAATCTCACAGTGCAAGAGATGCAAAGCCCTTCTGTAGGACAAGAGATGCAAGGGCCCTGGAGAACTATATTTTTGACCTCGAACAACACTTCAGGGCCACGAACAAAGTTACTGAGGAAGTCAAAGTTACACTGGCAATGTTGTACGATAGATACTTGGGATGCCTTAAAGAAAGAACTCCGCTCATAA

Coding sequence (CDS)

ATGCTCTACCTAGCTGAAGTTCCCGACTCCATCTGCTTCTTGGAGTCCCGTCTCGAAGAGATTGCTGAGAAAACTGACACAATCGATGCGGTAGCTGGCCGTGTCGAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTTGACACTCTAGAAGGAAACGTTGGAAGAATTGTTAACTACGAATATGGGGACAGTTTTTCGGGCCTTGTTTCCCACATGGAAGAACGTGCCAATGAGCTAGATAGTTCCCAGAAGACACTCTTAGAGATGATAAACGTCATGTCGGAGGATTTTCGAGTCACCCTCGATGTCATCAGAAATGAAATCGTAGATGTGAACGCGAGACTGAATCTCACAGTGCAAGAGATGCAAAGCCCTTCTGTAGGACAAGAGATGCAAGGGCCCTGGAGAACTATATTTTTGACCTCGAACAACACTTCAGGGCCACGAACAAAGTTACTGAGGAAGTCAAAGTTACACTGGCAATGTTGTACGATAGATACTTGGGATGCCTTAAAGAAAGAACTCCGCTCATAA

Protein sequence

MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNYEYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTVQEMQSPSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHWQCCTIDTWDALKKELRS
Homology
BLAST of MELO3C032714 vs. NCBI nr
Match: KAA0046343.1 (uncharacterized protein E6C27_scaffold149G00520 [Cucumis melo var. makuwa] >TYK30507.1 uncharacterized protein E5676_scaffold426G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 126/181 (69.61%), Postives = 142/181 (78.45%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSI FLESRLEEI EKTDTID VAGRVEGLPIQELLARV+TLEGN+ R V+Y
Sbjct: 22  MLYLAEVPDSIRFLESRLEEITEKTDTIDVVAGRVEGLPIQELLARVNTLEGNIRRTVSY 81

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EYGDS SG V+HMEER NELDSSQKTLLE+IN MSEDFR TLDV+RNEI DVNARLN+T+
Sbjct: 82  EYGDSSSGFVAHMEERINELDSSQKTLLEIINNMSEDFRATLDVVRNEIADVNARLNITI 141

Query: 121 QEMQS-------------------PSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHW 163
           + + +                   P  GQEMQ PW+TIFLT ++TS P+T L +KSKLHW
Sbjct: 142 RAIANQAPAGGAILVIRVKILEPKPFCGQEMQRPWKTIFLTLSSTSWPQTWLSKKSKLHW 201

BLAST of MELO3C032714 vs. NCBI nr
Match: TYK01393.1 (uncharacterized protein E5676_scaffold29G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-51
Identity = 124/196 (63.27%), Postives = 139/196 (70.92%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYL EVPDSI +LESRL+EI+EKTDTIDAVAGRVEGLPIQELLARVDTLE  + R VNY
Sbjct: 1   MLYLVEVPDSIRYLESRLDEISEKTDTIDAVAGRVEGLPIQELLARVDTLEQTLERTVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           E GDS SG  +HMEE  +ELDSSQKTLLEMIN MSEDFRVTLDVIRNEI +VNARLNLT+
Sbjct: 61  ERGDSSSGFAAHMEEHVSELDSSQKTLLEMINGMSEDFRVTLDVIRNEIANVNARLNLTM 120

Query: 121 QEM--QSPSVGQEMQGPWRTIFLTSNNTSGPRTK-------LLRKSKLHWQ--------- 179
           + M  Q+P  G          +  + NT     K       L   +KL W+         
Sbjct: 121 RAMANQAPVGG-------AISYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEG 180

BLAST of MELO3C032714 vs. NCBI nr
Match: KAA0036436.1 (uncharacterized protein E6C27_scaffold147G00010 [Cucumis melo var. makuwa] >TYK00051.1 uncharacterized protein E5676_scaffold360G001010 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 8.0e-51
Identity = 119/178 (66.85%), Postives = 127/178 (71.35%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEV DSICFLESRL+ IAEKTDTID VAGRVEGLPIQELLARVDTLE NVG+ VNY
Sbjct: 1   MLYLAEVSDSICFLESRLKVIAEKTDTIDTVAGRVEGLPIQELLARVDTLEANVGKSVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EYGDS SG+V+HMEER NELDSSQK LLEMIN MSEDFR TLDV+RN+I DVN RLNLT+
Sbjct: 61  EYGDSSSGIVAHMEERVNELDSSQKMLLEMINDMSEDFRATLDVVRNKIADVNTRLNLTM 120

Query: 121 QEMQSPSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHWQCCTIDTWDALKKELRS 179
           Q M      QE +G                             CTIDTWD LKKEL S
Sbjct: 121 QAM----ANQEEKG-----------------------------CTIDTWDVLKKELCS 145

BLAST of MELO3C032714 vs. NCBI nr
Match: KAA0040304.1 (uncharacterized protein E6C27_scaffold460G00040 [Cucumis melo var. makuwa] >TYK23401.1 uncharacterized protein E5676_scaffold142G004680 [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 7.5e-49
Identity = 118/187 (63.10%), Postives = 136/187 (72.73%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSI FLESRL+EI EKTD IDAVAG VEGLPIQELL RVDTLEGNVGR VNY
Sbjct: 22  MLYLAEVPDSIRFLESRLKEITEKTDIIDAVAGSVEGLPIQELLVRVDTLEGNVGRTVNY 81

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EY DS SG V HMEE  +ELDSSQKTLLEMI+ MSEDFR TL+V+RNEI DVNARLNLT+
Sbjct: 82  EYRDSSSGFVDHMEECVDELDSSQKTLLEMISGMSEDFRDTLNVVRNEIADVNARLNLTM 141

Query: 121 QEMQSPSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHWQC---------CTIDTWDA 179
           + + +    +E      T+ +  +  +     L + +KL  +          CTIDTWDA
Sbjct: 142 RAIVNQLQLEEQFRATNTV-IEEDKVTLAMMHLSQDAKLWCRFRYVDMQKGRCTIDTWDA 201

BLAST of MELO3C032714 vs. NCBI nr
Match: KAA0035434.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK25718.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 9.8e-49
Identity = 106/132 (80.30%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSICFLESRL+EIAEKTDTIDA+A RV+GLPIQELLARVDTLEGN+GRIVNY
Sbjct: 1   MLYLAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EY DS SG V+HMEER NELDSSQKTLLEMIN M EDFR T+DV+RNEI DVN RLNLTV
Sbjct: 61  EYRDSSSGFVTHMEERVNELDSSQKTLLEMINDMLEDFRATVDVVRNEIADVNVRLNLTV 120

Query: 121 QEM--QSPSVGQ 131
           + +  Q+P+ G+
Sbjct: 121 RAIANQAPAGGE 132

BLAST of MELO3C032714 vs. ExPASy TrEMBL
Match: A0A5D3E355 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00500 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.6e-59
Identity = 126/181 (69.61%), Postives = 142/181 (78.45%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSI FLESRLEEI EKTDTID VAGRVEGLPIQELLARV+TLEGN+ R V+Y
Sbjct: 22  MLYLAEVPDSIRFLESRLEEITEKTDTIDVVAGRVEGLPIQELLARVNTLEGNIRRTVSY 81

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EYGDS SG V+HMEER NELDSSQKTLLE+IN MSEDFR TLDV+RNEI DVNARLN+T+
Sbjct: 82  EYGDSSSGFVAHMEERINELDSSQKTLLEIINNMSEDFRATLDVVRNEIADVNARLNITI 141

Query: 121 QEMQS-------------------PSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHW 163
           + + +                   P  GQEMQ PW+TIFLT ++TS P+T L +KSKLHW
Sbjct: 142 RAIANQAPAGGAILVIRVKILEPKPFCGQEMQRPWKTIFLTLSSTSWPQTWLSKKSKLHW 201

BLAST of MELO3C032714 vs. ExPASy TrEMBL
Match: A0A5D3BNW0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00870 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.7e-51
Identity = 124/196 (63.27%), Postives = 139/196 (70.92%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYL EVPDSI +LESRL+EI+EKTDTIDAVAGRVEGLPIQELLARVDTLE  + R VNY
Sbjct: 1   MLYLVEVPDSIRYLESRLDEISEKTDTIDAVAGRVEGLPIQELLARVDTLEQTLERTVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           E GDS SG  +HMEE  +ELDSSQKTLLEMIN MSEDFRVTLDVIRNEI +VNARLNLT+
Sbjct: 61  ERGDSSSGFAAHMEEHVSELDSSQKTLLEMINGMSEDFRVTLDVIRNEIANVNARLNLTM 120

Query: 121 QEM--QSPSVGQEMQGPWRTIFLTSNNTSGPRTK-------LLRKSKLHWQ--------- 179
           + M  Q+P  G          +  + NT     K       L   +KL W+         
Sbjct: 121 RAMANQAPVGG-------AISYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEG 180

BLAST of MELO3C032714 vs. ExPASy TrEMBL
Match: A0A5A7T2X9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G001010 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.9e-51
Identity = 119/178 (66.85%), Postives = 127/178 (71.35%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEV DSICFLESRL+ IAEKTDTID VAGRVEGLPIQELLARVDTLE NVG+ VNY
Sbjct: 1   MLYLAEVSDSICFLESRLKVIAEKTDTIDTVAGRVEGLPIQELLARVDTLEANVGKSVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EYGDS SG+V+HMEER NELDSSQK LLEMIN MSEDFR TLDV+RN+I DVN RLNLT+
Sbjct: 61  EYGDSSSGIVAHMEERVNELDSSQKMLLEMINDMSEDFRATLDVVRNKIADVNTRLNLTM 120

Query: 121 QEMQSPSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHWQCCTIDTWDALKKELRS 179
           Q M      QE +G                             CTIDTWD LKKEL S
Sbjct: 121 QAM----ANQEEKG-----------------------------CTIDTWDVLKKELCS 145

BLAST of MELO3C032714 vs. ExPASy TrEMBL
Match: A0A5A7T9Z3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004680 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.6e-49
Identity = 118/187 (63.10%), Postives = 136/187 (72.73%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSI FLESRL+EI EKTD IDAVAG VEGLPIQELL RVDTLEGNVGR VNY
Sbjct: 22  MLYLAEVPDSIRFLESRLKEITEKTDIIDAVAGSVEGLPIQELLVRVDTLEGNVGRTVNY 81

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EY DS SG V HMEE  +ELDSSQKTLLEMI+ MSEDFR TL+V+RNEI DVNARLNLT+
Sbjct: 82  EYRDSSSGFVDHMEECVDELDSSQKTLLEMISGMSEDFRDTLNVVRNEIADVNARLNLTM 141

Query: 121 QEMQSPSVGQEMQGPWRTIFLTSNNTSGPRTKLLRKSKLHWQC---------CTIDTWDA 179
           + + +    +E      T+ +  +  +     L + +KL  +          CTIDTWDA
Sbjct: 142 RAIVNQLQLEEQFRATNTV-IEEDKVTLAMMHLSQDAKLWCRFRYVDMQKGRCTIDTWDA 201

BLAST of MELO3C032714 vs. ExPASy TrEMBL
Match: A0A5A7SVW0 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00080 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.7e-49
Identity = 106/132 (80.30%), Postives = 118/132 (89.39%), Query Frame = 0

Query: 1   MLYLAEVPDSICFLESRLEEIAEKTDTIDAVAGRVEGLPIQELLARVDTLEGNVGRIVNY 60
           MLYLAEVPDSICFLESRL+EIAEKTDTIDA+A RV+GLPIQELLARVDTLEGN+GRIVNY
Sbjct: 1   MLYLAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNY 60

Query: 61  EYGDSFSGLVSHMEERANELDSSQKTLLEMINVMSEDFRVTLDVIRNEIVDVNARLNLTV 120
           EY DS SG V+HMEER NELDSSQKTLLEMIN M EDFR T+DV+RNEI DVN RLNLTV
Sbjct: 61  EYRDSSSGFVTHMEERVNELDSSQKTLLEMINDMLEDFRATVDVVRNEIADVNVRLNLTV 120

Query: 121 QEM--QSPSVGQ 131
           + +  Q+P+ G+
Sbjct: 121 RAIANQAPAGGE 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046343.11.4e-5869.61uncharacterized protein E6C27_scaffold149G00520 [Cucumis melo var. makuwa] >TYK3... [more]
TYK01393.13.6e-5163.27uncharacterized protein E5676_scaffold29G00870 [Cucumis melo var. makuwa][more]
KAA0036436.18.0e-5166.85uncharacterized protein E6C27_scaffold147G00010 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0040304.17.5e-4963.10uncharacterized protein E6C27_scaffold460G00040 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0035434.19.8e-4980.30senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK25718... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3556.6e-5969.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BNW01.7e-5163.27Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T2X93.9e-5166.85Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T9Z33.6e-4963.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SVW04.7e-4980.30Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032714.1MELO3C032714.1mRNA