MELO3C032643 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032643
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr07: 9363271 .. 9364216 (+)
RNA-Seq Expression	MELO3C032643
Synteny	MELO3C032643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAACACGAATTTGCATCGCTTCTAAATGCGTTTATAACATCCCAACGTTAGTTACTACTTATGTCGAACCTGTTAAATAACGACACGAAGAGGATAACACACATCCCTCATGACAGTAGGCATAGGATTAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAGACCTAGTGTGTCGCCAGAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTCTGCCACCTACTAAGGACCATTGGTGGACTAACGTCGACCGAAGTCATCGATGTTGAAGAGATGATAACAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATATTTCGTCATTTTCACATGGTTTTGTTGGCCATTATTCGACTTCATGACGAGCTTTTGAAAAAATCACAACCAGTGGCTAACGATTGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTGTCTGGAACTTCATGCTTCCACCCCAACGACGTTTGATCTTGTTAATAATCATCATATATGCGTTGTAGAATTGCCTAGGTGCATTAGATGGGAGGTACATAAAAGTCAACGTTCCAGAAAGTGACCGGGCTAGGTACAGAACACGCAAGGGGGAGGTCGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATCAGTTGCGGACTCATGCATCCTCCATGATGCCATTTCAAGACCTAATGGCCTGAAGGTACCCAAGGGTAACTACCACCGCATTTTACCTATAAATGCAATTTTCCAATTAATAGCTGCGACATTTTAATCCTCCAATGTGATGATAGGCTATTACTACCTAGTTGATGCCGGGTACCCAAATGCAGAGGGTTTCCTCGCACCATACAGAAGCCAACGCTAG

mRNA sequence

ATGGACGAACACGAATTTGCATCGCTTCTAAATGCGTTTATAACATCCCAACGTTAGTTACTACTTATGTCGAACCTGTTAAATAACGACACGAAGAGGATAACACACATCCCTCATGACAGTAGGCATAGGATTAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAGACCTAGTGTGTCGCCAGAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTCTGCCACCTACTAAGGACCATTGGTGGACTAACGTCGACCGAAGTCATCGATGTTGAAGAGATGATAACAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATATTTCGTCATTTTCACATGGTTTTGTTGGCCATTATTCGACTTCATGACGAGCTTTTGAAAAAATCACAACCAGTGGCTAACGATTGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGGAGGTACATAAAAGTCAACGTTCCAGAAAGTGACCGGGCTAGGTACAGAACACGCAAGGGGGAGGTCGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATCAGTTGCGGACTCATGCATCCTCCATGATGCCATTTCAAGACCTAATGGCCTGAAGGTACCCAAGGGCTATTACTACCTAGTTGATGCCGGGTACCCAAATGCAGAGGGTTTCCTCGCACCATACAGAAGCCAACGCTAG

Coding sequence (CDS)

ATGTCGAACCTGTTAAATAACGACACGAAGAGGATAACACACATCCCTCATGACAGTAGGCATAGGATTAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAGACCTAGTGTGTCGCCAGAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTCTGCCACCTACTAAGGACCATTGGTGGACTAACGTCGACCGAAGTCATCGATGTTGAAGAGATGATAACAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATATTTCGTCATTTTCACATGGTTTTGTTGGCCATTATTCGACTTCATGACGAGCTTTTGAAAAAATCACAACCAGTGGCTAACGATTGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGGAGGTACATAAAAGTCAACGTTCCAGAAAGTGACCGGGCTAGGTACAGAACACGCAAGGGGGAGGTCGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATCAGTTGCGGACTCATGCATCCTCCATGATGCCATTTCAAGACCTAATGGCCTGAAGGTACCCAAGGGCTATTACTACCTAGTTGATGCCGGGTACCCAAATGCAGAGGGTTTCCTCGCACCATACAGAAGCCAACGCTAG

Protein sequence

MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTIGGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDELLKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR

Homology

[Close]

BLAST of MELO3C032643 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 3.1e-122
Identity = 214/239 (89.54%), Postives = 223/239 (93.31%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETI RHF+MVLLA+IRLHDEL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 447.2 bits (1149), Expect = 8.9e-122
Identity = 213/239 (89.12%), Postives = 223/239 (93.31%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETI RHF+MVLLA+IRLH+EL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 444.9 bits (1143), Expect = 4.4e-121
Identity = 210/239 (87.87%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETIFRHF+M+ LA+IRLHDEL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETIFRHFNMIFLAVIRLHDEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SD+ARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDQARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVD GYPN EGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNVEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 9.8e-121
Identity = 211/239 (88.28%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVC QSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCHQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHIL HDVKNRVIQREFMRSGETI RHF+MVLLA+IRLH+EL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. NCBI nr
Match: KAA0054346.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12383.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 9.8e-121
Identity = 211/239 (88.28%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 1   MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 60

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFL+ILAHDVKNRVIQREFMR GETI RHF+MVLLA+IRLH EL
Sbjct: 61  AGLTSTEVVDVEEMVAMFLNILAHDVKNRVIQREFMRLGETISRHFNMVLLAVIRLHQEL 120

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV NDCTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 121 LKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPVSDRARYRTRKGEVATNVLGVCDT 180

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDF+YVLAGWEGS ADS IL DA+SRPNGLKVPKGYYYLVD GYPNAEGFLAPYR QR
Sbjct: 181 KGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYYLVDVGYPNAEGFLAPYRGQR 239

[Close]

BLAST of MELO3C032643 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 214/239 (89.54%), Postives = 223/239 (93.31%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETI RHF+MVLLA+IRLHDEL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 4.3e-122
Identity = 213/239 (89.12%), Postives = 223/239 (93.31%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETI RHF+MVLLA+IRLH+EL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.1e-121
Identity = 210/239 (87.87%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHILAHDVKNRVIQREFMRSGETIFRHF+M+ LA+IRLHDEL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETIFRHFNMIFLAVIRLHDEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SD+ARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDQARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVD GYPN EGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNVEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. ExPASy TrEMBL
Match: A0A5D3CKE3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001650 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.8e-121
Identity = 211/239 (88.28%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTI
Sbjct: 1   MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAILCHLLRTI 60

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFL+ILAHDVKNRVIQREFMR GETI RHF+MVLLA+IRLH EL
Sbjct: 61  AGLTSTEVVDVEEMVAMFLNILAHDVKNRVIQREFMRLGETISRHFNMVLLAVIRLHQEL 120

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV NDCTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 121 LKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPVSDRARYRTRKGEVATNVLGVCDT 180

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDF+YVLAGWEGS ADS IL DA+SRPNGLKVPKGYYYLVD GYPNAEGFLAPYR QR
Sbjct: 181 KGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYYLVDVGYPNAEGFLAPYRGQR 239

[Close]

BLAST of MELO3C032643 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.8e-121
Identity = 211/239 (88.28%), Postives = 221/239 (92.47%), Query Frame = 0


Query: 1   MSNLLNNDTKRITHIPHDSRHRIRQLAYFRMIHASDLVCRQSTRMDRRCFAILCHLLRTI 60
           M  LL NDTKRITHIP+++RHRIRQLAYFRMIH SDLVC QSTRMDRRCFAILCHLLRTI
Sbjct: 23  MLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCHQSTRMDRRCFAILCHLLRTI 82

Query: 61  GGLTSTEVIDVEEMITMFLHILAHDVKNRVIQREFMRSGETIFRHFHMVLLAIIRLHDEL 120
            GLTSTEV+DVEEM+ MFLHIL HDVKNRVIQREFMRSGETI RHF+MVLLA+IRLH+EL
Sbjct: 83  AGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEEL 142

Query: 121 LKKSQPVANDCTDQRWRWFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDT 180
           LKK QPV N+CTDQRWRWFENCLGALDG YIKVNVP SDRARYRTRKGEVATNVLGVCDT
Sbjct: 143 LKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDT 202

Query: 181 KGDFVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           KGDFVYVLAGWEGS ADS IL DA+SRPN LKVPKGYYYLVDAGYPNAEGFLAPYR QR
Sbjct: 203 KGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQR 261

[Close]

BLAST of MELO3C032643 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-37
Identity = 81/208 (38.94%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 29  FRMIHASDLVCRQSTRMDRRCFAILCHLLRTIGGLTSTEVIDVEEMITMFLHILAHDVKN 88
           +++++  +  C ++ RMD+  F  LC LL+T G L  T  I +E  + +FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 89  RVIQREFMRSGETIFRHFHMVLLAIIRLHDELLKKSQPVAN-DCTDQRWRWFENCLGALD 148
           R +Q  F  SGETI RHF+ VL A+I +  +     QP +N D  +    +F++C+G +D
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVD 151

Query: 149 GRYIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSCILHDAISR 208
             +I V V   ++  +R   G +  NVL        F YVLAGWEGS +D  +L+ A++R
Sbjct: 152 SFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTR 211

Query: 209 PNGLKVPKGYYYLVDAGYPNAEGFLAPY 236
            N L+VP+G YY+VD  YPN  GF+APY
Sbjct: 212 RNKLQVPQGKYYIVDNKYPNLPGFIAPY 236

[Close]

BLAST of MELO3C032643 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 9.4e-29
Identity = 76/221 (34.39%), Postives = 108/221 (48.87%), Query Frame = 0


Query: 29  FRMIHASDLVCRQSTRMDRRCFAILCHLLRTIGGLTSTEVIDVEEMITMFLHILAHDVKN 88
           +R +      C Q  RM   CF  LC++L+T   L  T  I +EE + MFL I  H+   
Sbjct: 56  WRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVY 115

Query: 89  RVIQREFMRSGETIFRHFHMVLLAIIRLHDELLKKSQPVANDC--------TDQR-WRWF 148
           R +   F R+ ET+ R F  VL A   L  + ++   P   +          DQR W +F
Sbjct: 116 RDVGLRFGRNQETVQRKFREVLTATELLACDYIR--TPTRQELYRIPERLQVDQRYWPYF 175

Query: 149 ENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSC 208
              +GA+DG ++ V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ 
Sbjct: 176 SGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTA 235

Query: 209 ILHDAISRPNGLKVPKG-YYYLVDAGYPNAEGFLAPYRSQR 240
           +L  A    +   +P    YYLVD+GYPN +G LAPYRS R
Sbjct: 236 VLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSR 274

[Close]

BLAST of MELO3C032643 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 8.0e-20
Identity = 68/215 (31.63%), Postives = 100/215 (46.51%), Query Frame = 0


Query: 32  IHASDLVCRQSTRMDRRCFAILCHLLRTIGGLTSTEVIDVEEMITMFLHILAHDVKNRVI 91
           I+++++ C+   RM    F  LC +L    GL S+  I ++E + +FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 92  QREFMRSGETIFRHFHMVLLAIIRLHDELLK-----KSQPVANDCTD--QRWRWFENCLG 151
              F  + ETI+R FH VL A+ RL  E ++     + + ++N   D  + W +  + LG
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEELRAISNRLQDDTRYWPFLMDLLG 136

Query: 152 ALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSCILHDA 211
                                     + NVL +CD    F Y   G  GS  D+ +L  A
Sbjct: 137 I------------------------ASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAA 196

Query: 212 ISRPNGLKV-PKGYYYLVDAGYPNAEGFLAPYRSQ 239
           IS      V P   YYLVD+GY N  G+LAPYR +
Sbjct: 197 ISDDPLFHVPPDSKYYLVDSGYANKRGYLAPYRRE 207

[Close]

BLAST of MELO3C032643 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-14
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 138 WFENCLGALDGRYIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVAD 197
           +F++C+GA+D  +I   V +     +R RKG+++ N+L  C+   +F+YVL+GWEGS  D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

Query: 198 SCILHDAISR-PNGLKVPK 216
           S +L+DA++R  N L VP+
Sbjct: 81  SKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of MELO3C032643 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 184 FVYVLAGWEGSVADSCILHDAISRPNGLKVPKGYYYLVDAGYPNAEGFLAPYRSQR 240
           F+YVL+GWEGS  DS +L DA+ +          +YLVD G+ N   FLAP+R  R
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVR 70

The following BLAST results are available for this feature:

BLAST of MELO3C032643 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	3.1e-122	89.54	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0035620.1	8.9e-122	89.12	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0065736.1	4.4e-121	87.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051057.1	9.8e-121	88.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054346.1	9.8e-121	88.28	retrotransposon protein [Cucumis melo var. makuwa] >TYK12383.1 retrotransposon p...	[more]

BLAST of MELO3C032643 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	1.5e-122	89.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	4.3e-122	89.12	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHB0	2.1e-121	87.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CKE3	4.8e-121	88.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9H2	4.8e-121	88.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C032643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	4.2e-37	38.94	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	9.4e-29	34.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	8.0e-20	31.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	2.9e-14	41.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.2e-07	46.43	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 146..236 e-value: 8.1E-11 score: 41.8
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 22..230
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 22..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032643.1	MELO3C032643.1	mRNA