MELO3C032599 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032599
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor bHLH36-like
Location	chr10: 23287814 .. 23288148 (+)
RNA-Seq Expression	MELO3C032599
Synteny	MELO3C032599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGGCGTTGTTGAGTTAGGGAGGGAAAGGGAGAGGCAAAGAAGACAAAAAATTGATGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATCTATCAAGGTAATTTGTGGGATTGTGCACATGGAAAAGATAAACGGAGGGAGAAGAAACGAAAAAAGAAATATCAAGAACTCACCCACGGTGATATGGGTCTCCTCATCGTGGGTCTCCGTCGCTATGGGTCTCCTTGTCGTGGGTCTTCGTCGCTAAGAAGAAAGATTGTGGAGCGGAGAAGAATGGGGTTAAGGATGGGGTTTTCGTCGTGCATCGTTTGTCGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGGAGGGAAAGGGAGAGGCAAAGAAGACAAAAAATTGATGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATCTATCAAGGTAATTTGTGGGATTGTGCACATGGAAAAGATAAACGGAGGGAGAAGAAACGAAAAAAGAAATATCAAGAACTCACCCACGGTGATATGTCTCCTTGTCGTGGGTCTTCGTCGCTAAGAAGAAAGATTGTGGAGCGGAGAAGAATGGGGTTAAGGATGGGGTTTTCGTCGTGCATCGTTTGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGGAGGGAAAGGGAGAGGCAAAGAAGACAAAAAATTGATGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATCTATCAAGGTAATTTGTGGGATTGTGCACATGGAAAAGATAAACGGAGGGAGAAGAAACGAAAAAAGAAATATCAAGAACTCACCCACGGTGATATGTCTCCTTGTCGTGGGTCTTCGTCGCTAA

Protein sequence

MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIKNSPTVICLLVVGLRR

Homology

[Close]

BLAST of MELO3C032599 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDK VVELGRERERQRRQ+I ALYM LR LLPLE IKVICG VH  +    +R +KR  K
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGR--DKQREKKRKKK 60

Query: 61 NSPTV---ICLLVVGLRR 76
          +       I L VVGL R
Sbjct: 61 DQELTGDDIGLFVVGLHR 76

[Close]

BLAST of MELO3C032599 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKIN-GGRRNEKRNI 60
          MDKG+VELGRERERQRRQ+I ALYMSLRTLLPLE IKVI G +H  +     ++ +K++ 
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 KNSPTVICLLVVGLR 75
          + +   + LL VGLR
Sbjct: 61 ELTGDAMGLLAVGLR 75

[Close]

BLAST of MELO3C032599 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKR 58
          MDKGVV+L RERERQRRQ+I ALYM++RTLL LE IKVICGIVH E+     +  K+
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKK 57

[Close]

BLAST of MELO3C032599 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 9.3e-09
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDKGVVELGRERERQRRQ+I ALYMSLRTLLPLE IKV    V  +K   GR +EK  +K
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV---SVAKKK---GRGDEKNGVK 59

[Close]

BLAST of MELO3C032599 vs. NCBI nr
Match: KAA0048509.1 (CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 33/66 (50.00%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDK VVELGRER+RQR+Q+I                         E INGGRRNEKR IK
Sbjct: 1  MDKDVVELGRERKRQRKQEIG------------------------EVINGGRRNEKRKIK 42

Query: 61 NSPTVI 67
          NSP  I
Sbjct: 61 NSPVTI 42

[Close]

BLAST of MELO3C032599 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDK VVELGRERERQRRQ+I ALYM LR LLPLE IKVICG VH  +    +R +KR  K
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGR--DKQREKKRKKK 60

Query: 61 NSPTV---ICLLVVGLRR 76
          +       I L VVGL R
Sbjct: 61 DQELTGDDIGLFVVGLHR 76

[Close]

BLAST of MELO3C032599 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.7e-12
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKIN-GGRRNEKRNI 60
          MDKG+VELGRERERQRRQ+I ALYMSLRTLLPLE IKVI G +H  +     ++ +K++ 
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 KNSPTVICLLVVGLR 75
          + +   + LL VGLR
Sbjct: 61 ELTGDAMGLLAVGLR 75

[Close]

BLAST of MELO3C032599 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKR 58
          MDKGVV+L RERERQRRQ+I ALYM++RTLL LE IKVICGIVH E+     +  K+
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKK 57

[Close]

BLAST of MELO3C032599 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDKGVVELGRERERQRRQ+I ALYMSLRTLLPLE IKV    V  +K   GR +EK  +K
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV---SVAKKK---GRGDEKNGVK 59

[Close]

BLAST of MELO3C032599 vs. ExPASy TrEMBL
Match: A0A5A7U4Z1 (CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001190 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 33/66 (50.00%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 1  MDKGVVELGRERERQRRQKIDALYMSLRTLLPLESIKVICGIVHMEKINGGRRNEKRNIK 60
          MDK VVELGRER+RQR+Q+I                         E INGGRRNEKR IK
Sbjct: 1  MDKDVVELGRERKRQRKQEIG------------------------EVINGGRRNEKRKIK 42

Query: 61 NSPTVI 67
          NSP  I
Sbjct: 61 NSPVTI 42

The following BLAST results are available for this feature:

BLAST of MELO3C032599 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033316.1	1.2e-11	61.54	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri...	[more]
TYK30150.1	2.0e-11	58.67	transcription factor bHLH36 [Cucumis melo var. makuwa]	[more]
KAA0065871.1	2.9e-10	66.67	retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p...	[more]
KAA0044825.1	9.3e-09	70.00	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri...	[more]
KAA0048509.1	4.0e-04	50.00	CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 ...	[more]

BLAST of MELO3C032599 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ5	5.7e-12	61.54	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3E3K5	9.7e-12	58.67	Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VJK9	1.4e-10	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TTV0	4.5e-09	70.00	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7U4Z1	2.0e-04	50.00	CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C032599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 11..49 e-value: 2.4E-5 score: 24.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 10..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032599.1	MELO3C032599.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity