MELO3C032535 (gene) Melon (DHL92) v4

Overview
NameMELO3C032535
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase catalytic domain-containing protein
Locationchr05: 18788410 .. 18788706 (+)
RNA-Seq ExpressionMELO3C032535
SyntenyMELO3C032535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGAAAGACGAAGAGGGTTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACGAACAAGGAAGACGAAGAGAAGGTTTGCGAGAGATGGCGACCGCGAACAACGAAGACGAAGAGAAGGGAAAATTAGGGATTTA

mRNA sequence

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGCGACCGCGAACAACGAAGACGAAGAGAAGGGAAAATTAGGGATTTA

Coding sequence (CDS)

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGCGACCGCGAACAACGAAGACGAAGAGAAGGGAAAATTAG

Protein sequence

MGKTKSWKATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDKQKVRARDLGRPRTTKTKRREN
Homology
[Close]
BLAST of MELO3C032535 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 8  KATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDKQK 52
          KA S+REKAQQKHDR FDF EQGGRREGSCERFRVMANKED++K
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C032535 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 8  KATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDKQK 52
          KA S+REKAQQKHDR FDF EQGGRREGSCERFRVMANKED++K
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C032535 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.17.1e-1186.36uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C032535 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7843.4e-1186.36Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C032535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032535.1MELO3C032535.1mRNA