MELO3C032526.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032526.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein Ycf2-like
Locationchr07: 17002300 .. 17002587 (-)
RNA-Seq ExpressionMELO3C032526.jh1
SyntenyMELO3C032526.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGTCGAAGCAAAAGATGTCTAGGATTAAAGTTGAAACATATTAAATTGAACAAGGATGATCCAATTTTGATTGATAATATAGAAGTATATTTTAAATTTTTGGAGGAGTATTTGAAATGGTGTAAATTGTTAAACAAGATATAATATGTATATATATGGTAAAAGGAAGATAGATATGAAGAACCAATTCAGTACGAACCCACTACAAACTGTATATCCAGACGACGATGAACAAAAGTTAAGAGGACCTATAGTACACAAATTGTGCTGTACCAGAATTAG

mRNA sequence

ATGGTGCGTCGAAGCAAAAGATGTCTAGGATTAAAGTTGAAACATATTAAATTGAACAAGGATGATCCAATTTTGATTGATAATATAGAAAAGGAAGATAGATATGAAGAACCAATTCAGTACGAACCCACTACAAACTGTATATCCAGACGACGATGAACAAAAGTTAAGAGGACCTATAGTACACAAATTGTGCTGTACCAGAATTAG

Coding sequence (CDS)

ATGGTGCGTCGAAGCAAAAGATGTCTAGGATTAAAGTTGAAACATATTAAATTGAACAAGGATGATCCAATTTTGATTGATAATATAGAAAAGGAAGATAGATATGAAGAACCAATTCAGTACGAACCCACTACAAACTGTATATCCAGACGACGATGA

Protein sequence

MVRRSKRCLGLKLKHIKLNKDDPILIDNIEKEDRYEEPIQYEPTTNCISRRR
Homology
[Close]
BLAST of MELO3C032526.jh1 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.26e-12
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILI-DNIEKEDRYEEPIQYEP 43
          MVRRS+RCLGL+LK IK NKDDPI+I DN E+E RYEEPIQYEP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEP 44

[Close]
BLAST of MELO3C032526.jh1 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 1.92e-06
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILI-DNIEKEDRYEEPIQYEP 43
          MVRRS+RCLG +LK IK +KD+ ILI DN+E++ R EEP+ Y+P
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQP 44

[Close]
BLAST of MELO3C032526.jh1 vs. NCBI nr
Match: TYK07884.1 (uncharacterized protein E5676_scaffold1748G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 6.24e-05
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILIDNIEK 31
          MV RSKRCLGL LKHIK NKDDPI+I++  K
Sbjct: 44 MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAK 74

[Close]
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.09e-13
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILI-DNIEKEDRYEEPIQYEP 43
          MVRRS+RCLGL+LK IK NKDDPI+I DN E+E RYEEPIQYEP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEP 44

[Close]
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.32e-07
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILI-DNIEKEDRYEEPIQYEP 43
          MVRRS+RCLG +LK IK +KD+ ILI DN+E++ R EEP+ Y+P
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQP 44

[Close]
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C9H5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1748G00010 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.02e-05
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILIDNIEK 31
          MV RSKRCLGL LKHIK NKDDPI+I++  K
Sbjct: 44 MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAK 74

[Close]
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.88e-04
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1  MVRRSKRCLGLKLKHIKLNKDDPILIDNIE 30
          MVR+S RCLG ++KH+K NKDDPI+I++ E
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDTE 30

The following BLAST results are available for this feature:
BLAST of MELO3C032526.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043162.11.26e-1279.55uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.11.92e-0661.36protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK07884.16.24e-0574.19uncharacterized protein E5676_scaffold1748G00010 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032526.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIM36.09e-1379.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X19.32e-0761.36Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5D3C9H53.02e-0574.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKG55.88e-0463.33Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
BLAST of MELO3C032526.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032526.jh1.t1MELO3C032526.jh1.t1mRNA