MELO3C032510 (gene) Melon (DHL92) v4

Overview
NameMELO3C032510
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger, CCHC-type
Locationchr06: 9011382 .. 9011747 (-)
RNA-Seq ExpressionMELO3C032510
SyntenyMELO3C032510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTAAGAATATATATATATATATATATATATATATATATATATATATATATAGTATAATCTTTCTTTACTAACTCAAGAAGTGTATAAGTGTGAAGGACCCATGTCAAACCCCAAATTACAGGTTGAACAGTGAAGCTCACACTAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATAAAGAAGCAATCATTATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

mRNA sequence

GATTTAAGAATATATATATATATATATATATATATATATATATATATATATATAGTATAATCTTTCTTTACTAACTCAAGAAGTGTATAAGTGTGAAGGACCCATGTCAAACCCCAAATTACAGGTTGAACAGTGAAGCTCACACTAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATAAAGAAGCAATCATTATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

Coding sequence (CDS)

ATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATA

Protein sequence

MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI
Homology
[Close]
BLAST of MELO3C032510 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 4.9e-13
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 46
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 405 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 449

[Close]
BLAST of MELO3C032510 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 4.9e-13
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 46
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 441 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 485

[Close]
BLAST of MELO3C032510 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 46
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 405 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 449

[Close]
BLAST of MELO3C032510 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 46
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 441 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 485

The following BLAST results are available for this feature:
BLAST of MELO3C032510 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15114.14.9e-1388.89Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.14.9e-1388.89reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of MELO3C032510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CW052.4e-1388.89Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL92.4e-1388.89Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
BLAST of MELO3C032510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032510.1MELO3C032510.1mRNA