MELO3C032430 (gene) Melon (DHL92) v4

Overview
NameMELO3C032430
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPMD domain-containing protein
Locationchr07: 9374563 .. 9374986 (+)
RNA-Seq ExpressionMELO3C032430
SyntenyMELO3C032430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCAAAAACTATCCAAGAACCGAGGGAGCAACTTGGGTGGTAAACAAATTCTCTTGGTTGAGGTGATAGCTCATACCTTCGAGGGGGAGGTGAAGGAGCATGAAGATGAGAGCAATAACAGCAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATTAAGTGATGATCCTGGTTGAAGGGGTTCAAGTGCTGTTCCACCACTGATTTGCACATTTTTCTTTCTTAATTTTTTTTGTTCATCTTCTCTGTGAGTGATTTATTCATTGTTTACTTCTACAATCACCTTTGAACGATCATCTTGAAGGACTTATAGAGTTAGGCAGCGATGAACCTTTGACAGGGTCTCATGCAATTGATTCGGCCATCTGTTCCACCATTGGTTTGCATATTTTCCTTTTTTAATTTTTTTGT

mRNA sequence

AACCAAAAACTATCCAAGAACCGAGGGAGCAACTTGGGTGGTAAACAAATTCTCTTGGTTGAGGTGATAGCTCATACCTTCGAGGGGGAGGTGAAGGAGCATGAAGATGAGAGCAATAACAGCAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATTAAGTGATGATCCTGGTTGAAGGGGTTCAAGGTCTCATGCAATTGATTCGGCCATCTGTTCCACCATTGGTTTGCATATTTTCCTTTTTTAATTTTTTTGT

Coding sequence (CDS)

AACCAAAAACTATCCAAGAACCGAGGGAGCAACTTGGGTGGTAAACAAATTCTCTTGGTTGAGGTGATAGCTCATACCTTCGAGGGGGAGGTGAAGGAGCATGAAGATGAGAGCAATAACAGCAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATTAAGTGATGATCCTGGTTGA

Protein sequence

NQKLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDPG
Homology
BLAST of MELO3C032430 vs. NCBI nr
Match: KAA0067072.1 (hypothetical protein E6C27_scaffold38G001240 [Cucumis melo var. makuwa] >TYK26309.1 hypothetical protein E5676_scaffold14G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           KL KNRGSNLGGKQI LVE +A T EGEVKEHE++S++SKSD HWKRPLKK KV  DDP
Sbjct: 56  KLPKNRGSNLGGKQICLVEAMAPTLEGEVKEHENKSDSSKSDHHWKRPLKKGKVSGDDP 114

BLAST of MELO3C032430 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 3  KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
          KL+KNRGSNLGGK+I LVEV+A T + E+KEH+DES++SKSD HWKRPLKKAKV  DDP
Sbjct: 26 KLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDP 84

BLAST of MELO3C032430 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.3e-15
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           +L KNRGSNLGGK+I LVE +A   E EVKEH+DESNNSKSD HWKRPLKKAKV  D P
Sbjct: 585 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVSGDHP 643

BLAST of MELO3C032430 vs. NCBI nr
Match: KAA0025448.1 (hypothetical protein E6C27_scaffold417G00440 [Cucumis melo var. makuwa] >TYK04734.1 hypothetical protein E5676_scaffold68G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           +L KN+GSNLGGK+I LVE +AH  E EVKEH+DES++SKSD HWKRPLKKAKV  D+P
Sbjct: 302 RLPKNQGSNLGGKEIRLVETMAHNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDNP 360

BLAST of MELO3C032430 vs. NCBI nr
Match: TYJ98307.1 (hypothetical protein E5676_scaffold232G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           KL KNRGSNL GK+I LVE +A T E E+KEH+DES++SK+D HWKRPLKKAK+L DDP
Sbjct: 67  KLPKNRGSNLDGKEIRLVEAMAATLEEEIKEHKDESDSSKNDRHWKRPLKKAKLLGDDP 125

BLAST of MELO3C032430 vs. ExPASy TrEMBL
Match: A0A5A7VFC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00890 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           KL KNRGSNLGGKQI LVE +A T EGEVKEHE++S++SKSD HWKRPLKK KV  DDP
Sbjct: 56  KLPKNRGSNLGGKQICLVEAMAPTLEGEVKEHENKSDSSKSDHHWKRPLKKGKVSGDDP 114

BLAST of MELO3C032430 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 3  KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
          KL+KNRGSNLGGK+I LVEV+A T + E+KEH+DES++SKSD HWKRPLKKAKV  DDP
Sbjct: 26 KLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDP 84

BLAST of MELO3C032430 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-15
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           +L KNRGSNLGGK+I LVE +A   E EVKEH+DESNNSKSD HWKRPLKKAKV  D P
Sbjct: 585 RLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVSGDHP 643

BLAST of MELO3C032430 vs. ExPASy TrEMBL
Match: A0A5D3C0F3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00270 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.7e-15
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           +L KN+GSNLGGK+I LVE +AH  E EVKEH+DES++SKSD HWKRPLKKAKV  D+P
Sbjct: 302 RLPKNQGSNLGGKEIRLVETMAHNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDNP 360

BLAST of MELO3C032430 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 3   KLSKNRGSNLGGKQILLVEVIAHTFEGEVKEHEDESNNSKSDCHWKRPLKKAKVLSDDP 62
           KL KNRG+NLGGK+I LVE +A T E E+ EH+DE+++SKSD HWKRPLKKAKV SDDP
Sbjct: 531 KLPKNRGTNLGGKEIRLVEAMAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDP 589

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067072.11.1e-1576.27hypothetical protein E6C27_scaffold38G001240 [Cucumis melo var. makuwa] >TYK2630... [more]
KAA0054388.11.9e-1574.58hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681... [more]
KAA0050516.19.3e-1574.58hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa][more]
KAA0025448.11.6e-1471.19hypothetical protein E6C27_scaffold417G00440 [Cucumis melo var. makuwa] >TYK0473... [more]
TYJ98307.12.1e-1471.19hypothetical protein E5676_scaffold232G00230 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VFC05.3e-1676.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCT19.1e-1674.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8L34.5e-1574.58PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3C0F37.7e-1571.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D2A01.0e-1471.19PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032430.1MELO3C032430.1mRNA