MELO3C032411.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032411.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr07: 2964240 .. 2964488 (+)
RNA-Seq Expression	MELO3C032411.jh1
Synteny	MELO3C032411.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTTCATTATCCAATCGAACCCTGAACATCCCATTGGGAAGAGACTCGACGACGGATCCTTCATGGCTCAATTTCTGCTCGGAGGTGTCGTTTTTTGGAGACTTGGCCATGAGAGCGAAGCCTGGAGGAGCATGGGAAGGGGTATGGAGGAATTGGGAGGTGGGGAAAGAGATTGAGACAACGGAGAGATGGGATTTGACGGGGGGAAAAAGAAGAGTGGACGGTGGGCGGAAGTGGGATTGA

mRNA sequence

ATGAGGTCTTCATTATCCAATCGAACCCTGAACATCCCATTGGGAAGAGACTCGACGACGGATCCTTCATGGCTCAATTTCTGCTCGGAGGTGTCGTTTTTTGGAGACTTGGCCATGAGAGCGAAGCCTGGAGGAGCATGGGAAGGGGTATGGAGGAATTGGGAGGTGGGGAAAGAGATTGAGACAACGGAGAGATGGGATTTGACGGGGGGAAAAAGAAGAGTGGACGGTGGGCGGAAGTGGGATTGA

Coding sequence (CDS)

ATGAGGTCTTCATTATCCAATCGAACCCTGAACATCCCATTGGGAAGAGACTCGACGACGGATCCTTCATGGCTCAATTTCTGCTCGGAGGTGTCGTTTTTTGGAGACTTGGCCATGAGAGCGAAGCCTGGAGGAGCATGGGAAGGGGTATGGAGGAATTGGGAGGTGGGGAAAGAGATTGAGACAACGGAGAGATGGGATTTGACGGGGGGAAAAAGAAGAGTGGACGGTGGGCGGAAGTGGGATTGA

Protein sequence

MRSSLSNRTLNIPLGRDSTTDPSWLNFCSEVSFFGDLAMRAKPGGAWEGVWRNWEVGKEIETTERWDLTGGKRRVDGGRKWD

Homology

[Close]

BLAST of MELO3C032411.jh1 vs. NCBI nr
Match: RXH83121.1 (hypothetical protein DVH24_003619 [Malus domestica])

HSP 1 Score: 55.1 bits (131), Expect = 5.62e-07
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 3  SSLSNRTLNIPLGRDSTTDPSWLNFCSEVSFFGDLAMRAKPGGAWEGVWRNWEVGKE--- 62
          S+LSNR  NIPLG DS T PSWLNFCS     GDL + A   G   G+ R W   ++   
Sbjct: 4  SALSNRIRNIPLGSDSVTSPSWLNFCSSTP--GDL-LAATTNGNRLGLTRKWFPTRQWLL 63

Query: 63 -IETTERWDLT---GGKRRVDGGR 79
           +    RWD     G   RVDG R
Sbjct: 64 LLLVMWRWDWGFGFGWNLRVDGVR 84

[Close]

BLAST of MELO3C032411.jh1 vs. NCBI nr
Match: TQE10477.1 (hypothetical protein C1H46_003932 [Malus baccata])

HSP 1 Score: 54.3 bits (129), Expect = 9.13e-07
Identity = 38/84 (45.24%), Postives = 43/84 (51.19%), Query Frame = 0


Query: 3  SSLSNRTLNIPLGRDSTTDPSWLNFCSEVSFFGDLAMRAKPGGAWEGVWRNWEVGKE--- 62
          S+LSNR  NIPLG DS T PSWLNFCS     GDL + A   G   G+ R W   +    
Sbjct: 4  SALSNRIRNIPLGSDSVTSPSWLNFCSSTP--GDL-LAATTNGNRLGLTRKWFPTRHRLL 63

Query: 63 -IETTERWDLT---GGKRRVDGGR 79
           +    RWD     G   RVDG R
Sbjct: 64 LLLVMWRWDWGFGFGWNLRVDGVR 84

[Close]

BLAST of MELO3C032411.jh1 vs. ExPASy TrEMBL
Match: A0A498INR2 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003619 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.72e-07
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 3  SSLSNRTLNIPLGRDSTTDPSWLNFCSEVSFFGDLAMRAKPGGAWEGVWRNWEVGKE--- 62
          S+LSNR  NIPLG DS T PSWLNFCS     GDL + A   G   G+ R W   ++   
Sbjct: 4  SALSNRIRNIPLGSDSVTSPSWLNFCSSTP--GDL-LAATTNGNRLGLTRKWFPTRQWLL 63

Query: 63 -IETTERWDLT---GGKRRVDGGR 79
           +    RWD     G   RVDG R
Sbjct: 64 LLLVMWRWDWGFGFGWNLRVDGVR 84

[Close]

BLAST of MELO3C032411.jh1 vs. ExPASy TrEMBL
Match: A0A540NHF5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_003932 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.42e-07
Identity = 38/84 (45.24%), Postives = 43/84 (51.19%), Query Frame = 0


Query: 3  SSLSNRTLNIPLGRDSTTDPSWLNFCSEVSFFGDLAMRAKPGGAWEGVWRNWEVGKE--- 62
          S+LSNR  NIPLG DS T PSWLNFCS     GDL + A   G   G+ R W   +    
Sbjct: 4  SALSNRIRNIPLGSDSVTSPSWLNFCSSTP--GDL-LAATTNGNRLGLTRKWFPTRHRLL 63

Query: 63 -IETTERWDLT---GGKRRVDGGR 79
           +    RWD     G   RVDG R
Sbjct: 64 LLLVMWRWDWGFGFGWNLRVDGVR 84

The following BLAST results are available for this feature:

BLAST of MELO3C032411.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH83121.1	5.62e-07	45.24	hypothetical protein DVH24_003619 [Malus domestica]	[more]
TQE10477.1	9.13e-07	45.24	hypothetical protein C1H46_003932 [Malus baccata]	[more]

BLAST of MELO3C032411.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032411.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498INR2	2.72e-07	45.24	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003619 PE=4 SV=1	[more]
A0A540NHF5	4.42e-07	45.24	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_003932 PE=4 SV=1	[more]

BLAST of MELO3C032411.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032411.jh1.t1	MELO3C032411.jh1.t1	mRNA