MELO3C032153.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032153.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein Ycf2-like
Locationchr06: 20821992 .. 20824240 (+)
RNA-Seq ExpressionMELO3C032153.jh1
SyntenyMELO3C032153.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGAACGTTCCGATGAATTTTGTATTTTCCTAATATATTCAAATTTGAGATTGTCTTTCGGTGAATCTTGTGTTTTGGTTTCCATTAATTCCGGTTTGTTGGCAACATTAAAGATAGATCACAATTTATTTGACATGATTTTAGGGATAGTTGGGATTTGAATCTAAACTTAAGTATTCCCATTATATTTGCCATAATCTTAGGGAATGGTTGGAATTTAAATTTGAATTTTAGAGATTTGAATTTTGAATGTTTTAAATGCATTTCCGTTACTTTTCTTTAATGTTTTTGTATATGGTTAATTATTGCATCATGTTTATCATTATTTTAGGAAGAAAGAATTCATTGCATTAAAATTTTAGAACCTATTCATTGCGTTAATAGCTATTGAAGGAAAAAATCGGTAGCTAAAGTTTGAATATATAATTATTGAAGGAAAAAATGGGAATAATTAGGGGATATTGAAATCAATTGAATATGGTTAGGGATCTTTGAAATAATATAATAATTATTTGATTTGGTTAATAATTATCATAAGTGGGTGTGTTTACAGATATACTGTAATCGGCTATGTGATAATGACTTGTGGTCTGTTAGTTTCAAAAATATTAGTAATTAATAGATTTATTTTCTAATGACTTGTGGTCTGTTAGTTTCAAAAAAACTTATATATGTTGTTGCCTATTTAGATTTCGAGGAGGCGAGTTTACAGAGGAAGAGGTGAAGGAAAGAAACAAAAAGAGGTTGAAGGAAAGGTATAACAGTTAAACCTTTGTTATAGATGAATTATGTATTATATAAATTCAATATAACTTTGACAAATAGGAAGATACTGAAAGAGAAAGCGAAAAGGAGGAACAAGTAGAAGAAGATGAAGAAGTAGAAGAAGATAAACAACAAAATAAAGATAAACAAGTAGAAGAAGAACACGATGAAAAAGAGGAAGGGGAGACCGTAGTAGGTGAAGAGTCAAGTTCATCGCCTAGTGAACAAGATGAAACACCAACGGATACTAAGAAGAGAAAGAAGGCTGAGGAAAAGGGAAAGAAAGTAAGCACATAATTTTCATTTGATAAAGTGTTATTTTACGTATTGGCTATAAATTTTGGTTTTATAAAATAGGTGAAGGCTATTAAAAAAGAACAAAAGGCAAGAGAAGATAGAAGGAGGAAGGGAAAAGCCCCAATGAAACCAGAAAAATCTAAGGTATTTATTCTATGGTACTTCTGGTGTATGTGATTCATTCAGATACTCTGTATTTGTAATATTGTGAATGTATTGTATAGTACTTCTGTTGTATGTGTTTTGAATTTCATAATGGCTTGTATGTGGAGTTTGTATGTTTAAGTGTATTTGGTTGTATGTGATGCAGTTAATTACACTGTCTTTGGAAATTGTGAATGTAAATACTGTTCTGAATGTGTGGTATGTTATTTATATTGACAGTGTATTCAATTATTGCAATGTCCCAAAATTTAAGGTAATTTATTTTGATTATCTTAAGTTTAAATTTTTGTAATTTTGGGTGTTACTTTGTTGATTTATTTGATTTATGAAGATTGGATTTTTCTAGATATTAGGAAAATATCTAATTGTTGTAGTGTTTGGAGTTCATGATTTATTTGGTTTTATTTGAGAAAATTTGATTAATTATATATTTGATTGTATAATTAATTAAATTTTGAAGGTAAAATAATTATATTATGTGGATAATATAATTAGGTAGAGATATTTATTTAAAGATAAAGATGATTGGTTTGGAGAGAGAGAGAAATTTAAGTTTAAAGAGGAGATTTGACGAGTTTTAAACGAAGTGAGAGAAGATTTGTTTGGTTTAATTGTTAAAGAAAAGAAAAAAATTATTATTATTATTAAAGCCTCGGGAACATCAATCATCTTGTTCAACCAAACCTTAAAATCCCTAATTTTTTTTCTTCCATCAACTCGCCGCCGCCACCTCTTGCACCGTAACTCGAAGCCAGTCGCTGAGGAGTTCGTCTGCTGTATAGTCCTCCATCGCGCATCGCGCACGGTCTTCAAGCTAGCGCGGCCTGCTGTCGCGTCGGCCATCGTCTAAACCGACAGGTCGCCGAAGTAACCGCATCTTTGTGGAAGAGGAGTCGTGCATCGTTCTTGCACCGCCCGACCTGAGCCGCCTTCCTAAGTCTGATCCGTCGCCACAAACCCGAACCCGAGCCACGCGTACGCAAGCCCCATTCATGCGAGCCACTCTCCACGACTGA

mRNA sequence

ATGGCCATGAACGTTCCGATGAATTTTATTTCGAGGAGGCGAGTTTACAGAGGAAGAGGTGAAGGAAAGAAACAAAAAGAGGTTGAAGGAAAGGAAGATACTGAAAGAGAAAGCGAAAAGGAGGAACAAGTAGAAGAAGATGAAGAAGTAGAAGAAGATAAACAACAAAATAAAGATAAACAAGTAGAAGAAGAACACGATGAAAAAGAGGAAGGGGAGACCGTAGTAGGTGAAGAGTCAAGTTCATCGCCTAGTGAACAAGATGAAACACCAACGGATACTAAGAAGAGAAAGAAGGCTGAGGAAAAGGGAAAGAAAGTGAAGGCTATTAAAAAAGAACAAAAGGCAAGAGAAGATAGAAGGAGGAAGGGAAAAGCCCCAATGAAACCAGAAAAATCTAAGTTAATTACACTGTCTTTGGAAATTGTGAATGTAAATACTGTTCTGAATGTGTGGTATGTTATTTATATTGACAGTGTATTCAATTATTGCAATGTCCCAAAATTTAAGATAAAGATGATTGGTTTGGAGAGAGAGAGAAATTTAAGTTTAAAGAGGAGATTTGACGACCTCGGGAACATCAATCATCTTGTTCAACCAAACCTTAAAATCCCTAATTTTTTTTCTTCCATCAACTCGCCGCCGCCACCTCTTGCACCGTAACTCGAAGCCAGTCGCTGAGGAGTTCGTCTGCTGTATAGTCCTCCATCGCGCATCGCGCACGGTCTTCAAGCTAGCGCGGCCTGCTGTCGCGTCGGCCATCGTCTAAACCGACAGGTCGCCGAAGTAACCGCATCTTTGTGGAAGAGGAGTCGTGCATCGTTCTTGCACCGCCCGACCTGAGCCGCCTTCCTAAGTCTGATCCGTCGCCACAAACCCGAACCCGAGCCACGCGTACGCAAGCCCCATTCATGCGAGCCACTCTCCACGACTGA

Coding sequence (CDS)

ATGGCCATGAACGTTCCGATGAATTTTATTTCGAGGAGGCGAGTTTACAGAGGAAGAGGTGAAGGAAAGAAACAAAAAGAGGTTGAAGGAAAGGAAGATACTGAAAGAGAAAGCGAAAAGGAGGAACAAGTAGAAGAAGATGAAGAAGTAGAAGAAGATAAACAACAAAATAAAGATAAACAAGTAGAAGAAGAACACGATGAAAAAGAGGAAGGGGAGACCGTAGTAGGTGAAGAGTCAAGTTCATCGCCTAGTGAACAAGATGAAACACCAACGGATACTAAGAAGAGAAAGAAGGCTGAGGAAAAGGGAAAGAAAGTGAAGGCTATTAAAAAAGAACAAAAGGCAAGAGAAGATAGAAGGAGGAAGGGAAAAGCCCCAATGAAACCAGAAAAATCTAAGTTAATTACACTGTCTTTGGAAATTGTGAATGTAAATACTGTTCTGAATGTGTGGTATGTTATTTATATTGACAGTGTATTCAATTATTGCAATGTCCCAAAATTTAAGATAAAGATGATTGGTTTGGAGAGAGAGAGAAATTTAAGTTTAAAGAGGAGATTTGACGACCTCGGGAACATCAATCATCTTGTTCAACCAAACCTTAAAATCCCTAATTTTTTTTCTTCCATCAACTCGCCGCCGCCACCTCTTGCACCGTAA

Protein sequence

MAMNVPMNFISRRRVYRGRGEGKKQKEVEGKEDTERESEKEEQVEEDEEVEEDKQQNKDKQVEEEHDEKEEGETVVGEESSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKSKLITLSLEIVNVNTVLNVWYVIYIDSVFNYCNVPKFKIKMIGLERERNLSLKRRFDDLGNINHLVQPNLKIPNFFSSINSPPPPLAP
Homology
BLAST of MELO3C032153.jh1 vs. NCBI nr
Match: KAA0041558.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 8.83e-32
Identity = 96/136 (70.59%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 4   NVPMNF--ISRRRVYRGRGEGKKQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QN 63
           N+  +F  +SRRRVYRG+ EGKKQK+VEGKEDT+ ESEKEE+V+EDEEVEED+Q    ++
Sbjct: 34  NLSSSFEEVSRRRVYRGKREGKKQKDVEGKEDTKSESEKEEKVQEDEEVEEDEQDEDKED 93

Query: 64  KDKQVEEEHDEKEEGETVVGEESSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAR 123
           ++KQ EEE DE+EEGET +GE+S+SS SE    PTDTKKRKK  EKGKKVK IKKE+KAR
Sbjct: 94  EEKQDEEEQDEEEEGETAIGEDSNSSTSE---IPTDTKKRKKVAEKGKKVKTIKKEKKAR 153

Query: 124 EDRRRKGKAPMKPEKS 133
           EDRRRK KAPMKPEKS
Sbjct: 154 EDRRRKRKAPMKPEKS 166

BLAST of MELO3C032153.jh1 vs. NCBI nr
Match: TYK02880.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.02e-21
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  EDTE ESEKEE+V+EDEEVEED+Q    ++++KQ EEE DE+EE ET VGE+
Sbjct: 32  KKQRIKSLEDTESESEKEEKVQEDEEVEEDEQDEDKEDEEKQDEEEQDEEEEEETSVGED 91

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKSKL 135
           S+SS S     PTDTKKR+K  E GKKVKAIKKE+KAREDRRRKGKAPMKPEKS+L
Sbjct: 92  SNSSTSG---IPTDTKKREKVAEMGKKVKAIKKEEKAREDRRRKGKAPMKPEKSEL 144

BLAST of MELO3C032153.jh1 vs. NCBI nr
Match: KAA0066524.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK06122.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.45e-19
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 35  ERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEESSSSPSEQDET 94
           E ESEKE++V EDEEVEED+Q    +N++KQ EEE DE+EEGETVVGE+S SS SE    
Sbjct: 2   ESESEKEDKVHEDEEVEEDEQAEDQENEEKQYEEEQDEEEEGETVVGEDSISSTSE---I 61

Query: 95  PTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKSKLITLSLEIVNVNT 147
           P DTKKRKKA EK KKVKAIKKE+KAREDRRRKGKAPM  EKS+ + +   I    T
Sbjct: 62  PPDTKKRKKAGEKEKKVKAIKKEEKAREDRRRKGKAPMNLEKSEYLNVMFNISTTGT 115

BLAST of MELO3C032153.jh1 vs. NCBI nr
Match: KAA0050200.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.09e-17
Identity = 73/114 (64.04%), Postives = 92/114 (80.70%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  +DTE  SEKEE+V E+EEV+ED+Q    ++++KQ EEE DE+EEGET VGE+
Sbjct: 78  KKQRIKNLDDTE--SEKEEKVHEEEEVKEDEQAEDQEDEEKQYEEEQDEEEEGETTVGED 137

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKS 133
           S+SS SE    P DT+KR KA EKGKKVKA+KKE+KAREDRRRKGKAPM PEKS
Sbjct: 138 SNSSTSE---IPPDTRKRSKAREKGKKVKAVKKEEKAREDRRRKGKAPMNPEKS 186

BLAST of MELO3C032153.jh1 vs. NCBI nr
Match: TYJ98210.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 5.40e-17
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  +DTE  SEKEE+V E+EEV+ED+Q    ++++KQ EEE DE+EEGET VGE+
Sbjct: 78  KKQRIKNLDDTE--SEKEEKVHEEEEVKEDEQAEDQEDEEKQYEEEQDEEEEGETTVGED 137

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKS 133
           S+SS SE    P DT+KR KA EKGKKVKA+KKE+ AREDRRRKGKAPM PEKS
Sbjct: 138 SNSSTSE---IPPDTRKRSKAREKGKKVKAVKKEENAREDRRRKGKAPMNPEKS 186

BLAST of MELO3C032153.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TF74 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00140 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 4.28e-32
Identity = 96/136 (70.59%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 4   NVPMNF--ISRRRVYRGRGEGKKQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QN 63
           N+  +F  +SRRRVYRG+ EGKKQK+VEGKEDT+ ESEKEE+V+EDEEVEED+Q    ++
Sbjct: 34  NLSSSFEEVSRRRVYRGKREGKKQKDVEGKEDTKSESEKEEKVQEDEEVEEDEQDEDKED 93

Query: 64  KDKQVEEEHDEKEEGETVVGEESSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAR 123
           ++KQ EEE DE+EEGET +GE+S+SS SE    PTDTKKRKK  EKGKKVK IKKE+KAR
Sbjct: 94  EEKQDEEEQDEEEEGETAIGEDSNSSTSE---IPTDTKKRKKVAEKGKKVKTIKKEKKAR 153

Query: 124 EDRRRKGKAPMKPEKS 133
           EDRRRK KAPMKPEKS
Sbjct: 154 EDRRRKRKAPMKPEKS 166

BLAST of MELO3C032153.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BUT1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00090 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.94e-22
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  EDTE ESEKEE+V+EDEEVEED+Q    ++++KQ EEE DE+EE ET VGE+
Sbjct: 32  KKQRIKSLEDTESESEKEEKVQEDEEVEEDEQDEDKEDEEKQDEEEQDEEEEEETSVGED 91

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKSKL 135
           S+SS S     PTDTKKR+K  E GKKVKAIKKE+KAREDRRRKGKAPMKPEKS+L
Sbjct: 92  SNSSTSG---IPTDTKKREKVAEMGKKVKAIKKEEKAREDRRRKGKAPMKPEKSEL 144

BLAST of MELO3C032153.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C4F8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00140 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.02e-20
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 35  ERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEESSSSPSEQDET 94
           E ESEKE++V EDEEVEED+Q    +N++KQ EEE DE+EEGETVVGE+S SS SE    
Sbjct: 2   ESESEKEDKVHEDEEVEEDEQAEDQENEEKQYEEEQDEEEEGETVVGEDSISSTSE---I 61

Query: 95  PTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKSKLITLSLEIVNVNT 147
           P DTKKRKKA EK KKVKAIKKE+KAREDRRRKGKAPM  EKS+ + +   I    T
Sbjct: 62  PPDTKKRKKAGEKEKKVKAIKKEEKAREDRRRKGKAPMNLEKSEYLNVMFNISTTGT 115

BLAST of MELO3C032153.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U4J7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00310 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.28e-18
Identity = 73/114 (64.04%), Postives = 92/114 (80.70%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  +DTE  SEKEE+V E+EEV+ED+Q    ++++KQ EEE DE+EEGET VGE+
Sbjct: 78  KKQRIKNLDDTE--SEKEEKVHEEEEVKEDEQAEDQEDEEKQYEEEQDEEEEGETTVGED 137

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKS 133
           S+SS SE    P DT+KR KA EKGKKVKA+KKE+KAREDRRRKGKAPM PEKS
Sbjct: 138 SNSSTSE---IPPDTRKRSKAREKGKKVKAVKKEEKAREDRRRKGKAPMNPEKS 186

BLAST of MELO3C032153.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BEG7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001070 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.61e-17
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 0

Query: 24  KQKEVEGKEDTERESEKEEQVEEDEEVEEDKQ----QNKDKQVEEEHDEKEEGETVVGEE 83
           K++ ++  +DTE  SEKEE+V E+EEV+ED+Q    ++++KQ EEE DE+EEGET VGE+
Sbjct: 78  KKQRIKNLDDTE--SEKEEKVHEEEEVKEDEQAEDQEDEEKQYEEEQDEEEEGETTVGED 137

Query: 84  SSSSPSEQDETPTDTKKRKKAEEKGKKVKAIKKEQKAREDRRRKGKAPMKPEKS 133
           S+SS SE    P DT+KR KA EKGKKVKA+KKE+ AREDRRRKGKAPM PEKS
Sbjct: 138 SNSSTSE---IPPDTRKRSKAREKGKKVKAVKKEENAREDRRRKGKAPMNPEKS 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041558.18.83e-3270.59protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK02880.11.02e-2167.24protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0066524.11.45e-1965.81protein Ycf2-like [Cucumis melo var. makuwa] >TYK06122.1 protein Ycf2-like [Cucu... [more]
KAA0050200.11.09e-1764.04protein Ycf2-like [Cucumis melo var. makuwa][more]
TYJ98210.15.40e-1763.16protein Ycf2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TF744.28e-3270.59Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001... [more]
A0A5D3BUT14.94e-2267.24Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00... [more]
A0A5D3C4F87.02e-2065.81Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00... [more]
A0A5A7U4J75.28e-1864.04Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00... [more]
A0A5D3BEG72.61e-1763.16Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032153.jh1.t1MELO3C032153.jh1.t1mRNA