Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGTTAAATTGTGAAATTACTAACGTACTCCATGTATTTTTTGTAATTTGTCATTCTCAGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGAAGGAGGGCACTCTTGTGGAATGTTTAGTGGAGTTGGTGTAAATGGGGGGATGGAAATCAGATAATGGTACGTTCTGTCCAGGTTACCTTATGCAGTTGGTACGCATAATGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTACGGAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCACAATGTACATTTACTTAACAATTTTTCAATCAGTACTCATACGTGATATTTTTTTTCCCACAGTCGCATCATGCAGCGAAGAGACTCCTGAACAAACCATTCCCGTATTATGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACGAGTCGGTTAGCTGAGACATTCGCCGACGTGGGGTCTAACGAGCCTGACAGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTACCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACAATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCAGATCGAGTGGATCCAAGAGAAAGAGGAGAAGTCAGCGAGACTTGGATGTTGAAGCCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGTGCACGGAATAATTCTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGAGGTTACGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATCACGAGATA
mRNA sequence
ACTGTTAAATTGTGAAATTACTAACGTACTCCATGTATTTTTTGTAATTTGTCATTCTCAGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGAAGGAGGGCACTCTTGTGGAATGTTTAGTGGAGTTGGTGTAAATGGGGGGATGGAAATCAGATAATGGTACGTTCTGTCCAGGTTACCTTATGCAGTTGGTACGCATAATGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTACGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCATGCAGCGAAGAGACTCCTGAACAAACCATTCCCGTATTATGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACGAGTCGGTTAGCTGAGACATTCGCCGACGTGGGGTCTAACGAGCCTGACAGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTACCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACAATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCAGATCGAGTGGATCCAAGAGAAAGAGGAGAAGTCAGCGAGACTTGGATGTTGAAGCCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGAGGTTACGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATCACGAGATA
Coding sequence (CDS)
ATGGGGGGATGGAAATCAGATAATGGTACGTTCTGTCCAGGTTACCTTATGCAGTTGGTACGCATAATGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTACGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCATGCAGCGAAGAGACTCCTGAACAAACCATTCCCGTATTATGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACGAGTCGGTTAGCTGAGACATTCGCCGACGTGGGGTCTAACGAGCCTGACAGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTACCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACAATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCAGATCGAGTGGATCCAAGAGAAAGAGGAGAAGTCAGCGAGACTTGGATGTTGAAGCCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGCATATTGCGTGA
Protein sequence
MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHVHIA
Homology
BLAST of MELO3C032144 vs. NCBI nr
Match:
KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 404.1 bits (1037), Expect = 8.0e-109
Identity = 198/220 (90.00%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCII EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD DVEAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. NCBI nr
Match:
KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 401.0 bits (1029), Expect = 6.8e-108
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. NCBI nr
Match:
TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 401.0 bits (1029), Expect = 6.8e-108
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. NCBI nr
Match:
KAA0044610.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 194/220 (88.18%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRAS+GRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. NCBI nr
Match:
KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 194/220 (88.18%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL++IAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. ExPASy TrEMBL
Match:
A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)
HSP 1 Score: 404.1 bits (1037), Expect = 3.9e-109
Identity = 198/220 (90.00%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCII EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD DVEAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. ExPASy TrEMBL
Match:
A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)
HSP 1 Score: 401.0 bits (1029), Expect = 3.3e-108
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. ExPASy TrEMBL
Match:
A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)
HSP 1 Score: 401.0 bits (1029), Expect = 3.3e-108
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. ExPASy TrEMBL
Match:
A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)
HSP 1 Score: 399.8 bits (1026), Expect = 7.3e-108
Identity = 194/220 (88.18%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL++IAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. ExPASy TrEMBL
Match:
A0A5A7TN44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003610 PE=4 SV=1)
HSP 1 Score: 399.8 bits (1026), Expect = 7.3e-108
Identity = 194/220 (88.18%), Postives = 205/220 (93.18%), Query Frame = 0
Query: 1 MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 60
MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC
Sbjct: 30 MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89
Query: 61 SGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETF 120
SGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYYDELTYVFGRDRAT R AETF
Sbjct: 90 SGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETF 149
Query: 121 ADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRK 180
ADVGSNEP YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRAS+GRT SSGSKRK
Sbjct: 150 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRK 209
Query: 181 RRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHV 220
R SQRD ++EAIHLALDQTNEQL+QIAEWPAR LANDNHV
Sbjct: 210 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHV 249
BLAST of MELO3C032144 vs. TAIR 10
Match:
AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )
HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 31/119 (26.05%), Postives = 55/119 (46.22%), Query Frame = 0
Query: 37 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKP 96
V+ R K+L+R F AI + GF W++E + + + ++ +++++H A++ + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295
Query: 97 FPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDMGDGNEELPPVYSQG-IDLS 155
PYY +L + G D G E + + D D E S G DLS
Sbjct: 296 IPYYKDLCVLCG-------------DSGIEENECFVAMDWFDPETEFQEFKSSGTTDLS 339
BLAST of MELO3C032144 vs. TAIR 10
Match:
AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )
HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 31/119 (26.05%), Postives = 55/119 (46.22%), Query Frame = 0
Query: 37 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKP 96
V+ R K+L+R F AI + GF W++E + + + ++ +++++H A++ + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295
Query: 97 FPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDMGDGNEELPPVYSQG-IDLS 155
PYY +L + G D G E + + D D E S G DLS
Sbjct: 296 IPYYKDLCVLCG-------------DSGIEENECFVAMDWFDPETEFQEFKSSGTTDLS 339
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0066208.1 | 8.0e-109 | 90.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0032766.1 | 6.8e-108 | 88.64 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK21395.1 | 6.8e-108 | 88.64 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p... | [more] |
KAA0044610.1 | 1.5e-107 | 88.18 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0033744.1 | 1.5e-107 | 88.18 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VES2 | 3.9e-109 | 90.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DCZ1 | 3.3e-108 | 88.64 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SRU1 | 3.3e-108 | 88.64 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TRV1 | 7.3e-108 | 88.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TN44 | 7.3e-108 | 88.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT4G02210.1 | 1.2e-06 | 26.05 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT4G02210.2 | 1.2e-06 | 26.05 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |