MELO3C032094 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032094
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Dxs1
Location	chr06: 18914559 .. 18917262 (+)
RNA-Seq Expression	MELO3C032094
Synteny	MELO3C032094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGGTTTGCAAAATCTTGCATCTGCCACTGTTGGGGCAATGCCTCTTGTTTTCAGCAATTCCGAAGCTTCAACACATTGTTGAACTATTGAACCATACCCCAATATAGCAACTCTAGTGCCTTCCATCAGTATTCTCCCTTTGCCAATCTGTTTAACGGAAGTGAAGTCAACAATGTGTTATATTTTACTTTGAGATAGTTACTTTATAACCTTCTTAATGCTTAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGTAGTTTCTGAAGGTCTACATCGTGCACCACCTTGATTACCATTCCATATAGTTAGTAATTAGGAAAACACAAAATTGTCGATGAAAAATAATCTTTTCAATTACTGGTACCTAAGATCTGTTTGGCTTACATTCCAAGTGCTTAAAAATGTAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAGCACAAAATGGCTTGATACCCTCTGTTGCTAAACCAGCTGCAAATGTAACAGCATGTTGCTCGGCGATCCCGACGTCGAAGCAACGCTGTGGGAACCTCTTCTGGAAATAGTTAAGACCAGTTCCACCACCCATGGCAGCATGGATGGCTACAATTTTGTCGTCCAGTTCAGCTTCTTTTATCAGAGATTCAGCAAAGTATTGAGTATATGAAAGTGTGGGGGATTTTGTCTTGAATTGCTTGCCTGTTTTGGGATCAAACTTGACTACTCCTGAATTATTACAAGATTTGCAAAGAATTAAGTATTTGAAAGAATCCATGGAAGTAAACAAGATGCTCAATTAGAATAGAGTCTAACCATGCATTTTATCTGCAGCTGCTTCTGCTGGAGGATAGCCCTTCCCTTTTTCTGTAAGAATGTGGATCAATACCGGTCCAGGGGCTGGCATTGATTTGACTTTATCCAAAATGGTGACCAAATCTCCCACATTGTGTCCATCCACTGGTCCAATATAATACAAGCCTAGCTCCTCGAAAAATGTCGATCCCGAACCACTTATCATGCCTCTTGCATATTCATCGACTTTGGCTGCAACTCCATGGGTTTGCTTTCCAATTTGTTTGGTGATGGTCTTAAAGGAATGGTATGAAAGTCATCAACTTTGATAAACCAAGGTTTTATTTTGAATGAATTTTTAAATTTATAATACCGCTTGCCAAGCACTTCTAAAGTCATTTCAAATAGACTCTAACTTGTTGTGCTGACATGAAATATAATATCAATGCAGTGAATGTGTAAGGCGTATGCAATTAATCCTCTAATATCTTACCTTTGCAGCTTCGCGAAGTTTTCGAAACTGTGTACTTGCTTGAAGTTTGGTTAAGGCACTGCTGAGAGCTCCAACAGGAGTAGCAGGGCCATCAAGAGTAGCAGTCGGCAATGAGACTTGCTTGTTGTCATTTAGAATAACGATCATGTTCGTATCGAGATAGCCTGCATTATTCATCGCCTCGTATGCTTGGCCTGCTGTCATAGCTCCATCCCCAATCACAGAAATGACGCTGTTCTTTTTTCCCAAAAGGTCTCTTCCAACTGCCATGCCTACATTGTTTTCATTGTGGATCGGGACAAAGATTCATTAAAAAGAAGAATAATGTGCGTCTCATTAAAATTAAACCCTCTGAAATTGAAAAAGAGTAAATGAGGAGAATATAAGACATACCAAGACCAGCTGATATGCTTGTAGAACTGTGTCCTGCACCAAATGCATCATGAATACTTTCATCCCTTTTTGGAAAGCCAGCAAGCCCTGAAGTTTGCCTTAAAGTATGCATTCTAGACCTTCTTCCAGTGAGAATTTTGTGAGGATATGCCTGTAAAAAACACCACCGAAATGAACTCTAATCCTAAAAATAAATCTCATTATTGTAATACTTTTGTTGGATATGCACCTGATGGCCAACATCCCATATGATTTTGTCGTCTGGAGTGTTGAACACATGATGCAGTGCCACGGCTAGCTCGACAACGCCTAAGCTTGCACTTAAATGACCTCCAGTTTTTGATACAGAGAACACAATTTCTGCTCTAAGCTCTGCTGCTAGCTGCTCAAGATCCTGAAAAAAAGATCTCAAATGATCATAATAAGAAAGAGCAAAAAATGGCACAATGGAAGAAAAGTTGACAATGCTCAACAACAAAAAGAGGTTTACCTGTACTGATAGGTTCTTCATATGAATAGGAAAATTCACAGTGTCCAACAATGGGGTCGCTGGTTTTTCGCCTGAGTAGTCAATCGTCAATCCATCTTTTTCTTTATCTGGCAAATTCTTCCCTTCTCCATTCGTGCTATTACTCGAAGCTCTCAAACAAAACTGTATGAAGAACAAACAATG

mRNA sequence

ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAGCACAAAATGGCTTGATACCCTCTGTTGCTAAACCAGCTGCAAATGTAACAGCATGTTGCTCGGCGATCCCGACGTCGAAGCAACGCTGTGGGAACCTCTTCTGGAAATAGTTAAGACCAGTTCCACCACCCATGGCAGCATGGATGGCTACAATTTTGTCGTCCAGTTCAGCTTCTTTTATCAGAGATTCAGCAAAGTATTGAGTATATGAAAGTGTGGGGGATTTTGTCTTGAATTGCTTGCCTGTTTTGGGATCAAACTTGACTACTCCTGAATTATTACAAGATTTGCAAAGAATTAAGTATTTGAAAGAATCCATGGAAGTAAACAAGATGCTCAATTAGAATAGAGTCTAACCATGCATTTTATCTGCAGCTGCTTCTGCTGGAGGATAGCCCTTCCCTTTTTCTGTAAGAATGTGGATCAATACCGGTCCAGGGGCTGGCATTGATTTGACTTTATCCAAAATGGTGACCAAATCTCCCACATTGTGTCCATCCACTGGTCCAATATAATACAAGCCTAGCTCCTCGAAAAATGTCGATCCCGAACCACTTATCATGCCTCTTGCATATTCATCGACTTTGGCTGCAACTCCATGGGTTTGCTTTCCAATTTGTTTGGTGATGGTCTTAAAGGAATGCTTCGCGAAGTTTTCGAAACTGTGTACTTGCTTGAAGTTTGGTTAAGGCACTGCTGAGAGCTCCAACAGGAGTAGCAGGGCCATCAAGAGTAGCAGTCGGCAATGAGACTTGCTTGTTGTCATTTAGAATAACGATCATGTTCGTATCGAGATAGCCTGCATTATTCATCGCCTCGTATGCTTGGCCTGCTGTCATAGCTCCATCCCCAATCACAGAAATGACGCTGTTCTTTTTTCCCAAAAGGTCTCTTCCAACTGCCATGCCTACATTGTTTTCATTGTGGATCGGGACAAAGATTCATTAAAAAGAAGAATAATGTGCGTCTCATTAAAATTAAACCCTCTGAAATTGAAAAAGAGTAAATGAGGAGAATATAAGACATACCAAGACCAGCTGATATGCTTGTAGAACTGTGTCCTGCACCAAATGCATCATGAATACTTTCATCCCTTTTTGGAAAGCCAGCAAGCCCTGAAGTTTGCCTTAAAGTATGCATTCTAGACCTTCTTCCAGTGAGAATTTTGTGAGGATATGCCTGTAAAAAACACCACCGAAATGAACTCTAATCCTAAAAATAAATCTCATTATTGTAATACTTTTGTTGGATATGCACCTGATGGCCAACATCCCATATGATTTTGTCGTCTGGAGTGTTGAACACATGATGCAGTGCCACGGCTAGCTCGACAACGCCTAAGCTTGCACTTAAATGACCTCCAGTTTTTGATACAGAGAACACAATTTCTGCTCTAAGCTCTGCTGCTAGCTGCTCAAGATCCTGAAAAAAAGATCTCAAATGATCATAATAAGAAAGAGCAAAAAATGGCACAATGGAAGAAAAGTTGACAATGCTCAACAACAAAAAGAGGTTTACCTGTACTGATAGGTTCTTCATATGAATAGGAAAATTCACAGTGTCCAACAATGGGGTCGCTGGTTTTTCGCCTGAGTAGTCAATCGTCAATCCATCTTTTTCTTTATCTGGCAAATTCTTCCCTTCTCCATTCGTGCTATTACTCGAAGCTCTCAAACAAAACTGTATGAAGAACAAACAATG

Coding sequence (CDS)

ATGAGAACCAAAGCCTCCAATGGAGCCTTCCTCCACAGTAATCAGAATTTCATGTTCTTTTGCCAGTTGCCTAATAAGTTGAGTGTCAAGAGAGTATTTGTTTATTTCATGCTAACCTCAATTGGAGTCCCTTTGAAGTTAGGAGGAACAACAACTCCTATCCCATTGCCCCTTGGAAACCGAAAACAACTTGGTCTATCGTCTATCGCTGCTGCTGTCGCAACCATGTGTATTAGTTCAGCTTCATCAGCTGGAGCCATGACAATCATGTTCGGCAAACAAGCCATGTATGTTATATCAAATGCTCCACAATGTGTCGGGCCATCAGCACCGACCAAACCAGCTCTATCCATTGCAAAGCGGACAGGGTCAATATCGTTCCAAATATACATACCTGATCAAACCCTCTTTGAAGGAAGGATGAGTAAATAG

Protein sequence

MRTKASNGAFLHSNQNFMFFCQLPNKLSVKRVFVYFMLTSIGVPLKLGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGSISFQIYIPDQTLFEGRMSK

Homology

[Close]

BLAST of MELO3C032094 vs. NCBI nr
Match: KAF1875171.1 (hypothetical protein Lal_00007787 [Lupinus albus])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 72  AVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           AVATMCISS SS GAMT M GK+AMYVISNAPQCVGPSAPTKPALS A RT S
Sbjct: 4   AVATMCISSVSSDGAMTTMLGKEAMYVISNAPQCVGPSAPTKPALSTANRTAS 56

[Close]

BLAST of MELO3C032094 vs. NCBI nr
Match: KMT09296.1 (hypothetical protein BVRB_6g133950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 37 MLTSIGVPLKLGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAM 96
          ML +        G  TPIP PLG  KQLGLSSIA AVATMCISSASS GAMT +FGKQAM
Sbjct: 1  MLLAYSSAFAARGRGTPIPFPLGYLKQLGLSSIATAVATMCISSASSDGAMTTIFGKQAM 60

[Close]

BLAST of MELO3C032094 vs. NCBI nr
Match: GER38040.1 (tannin-related R2R3 MYB transcription factor [Striga asiatica])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-06
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 47  LGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAM 97
           LGG + P+P PLG  +QLG SSI AAVA MC+SSASS GA+T M G+QAM
Sbjct: 54  LGGISAPMPFPLGYLRQLGRSSIIAAVAIMCMSSASSEGAITTMLGRQAM 103

[Close]

BLAST of MELO3C032094 vs. ExPASy TrEMBL
Match: A0A6A5MJN2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00007787 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 72  AVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           AVATMCISS SS GAMT M GK+AMYVISNAPQCVGPSAPTKPALS A RT S
Sbjct: 4   AVATMCISSVSSDGAMTTMLGKEAMYVISNAPQCVGPSAPTKPALSTANRTAS 56

[Close]

BLAST of MELO3C032094 vs. ExPASy TrEMBL
Match: A0A0A9NGY5 (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 69  IAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           +AAAVATM  SSASS GAMT M G+ AMYV SNAPQ VGPSAPT PALS+A  TGS
Sbjct: 1   MAAAVATMWQSSASSDGAMTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANLTGS 56

[Close]

BLAST of MELO3C032094 vs. ExPASy TrEMBL
Match: A0A0A9N9X4 (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 69  IAAAVATMCISSASSAGAMTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           +AAAVATM  SSASS GAMT M G+ AMYV SNAPQ VGPSAPT PALS+A  TGS
Sbjct: 1   MAAAVATMWQSSASSDGAMTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANLTGS 56

[Close]

BLAST of MELO3C032094 vs. ExPASy TrEMBL
Match: A0A5A7PYW9 (Tannin-related R2R3 MYB transcription factor OS=Striga asiatica OX=4170 GN=STAS_14499 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 47  LGGTTTPIPLPLGNRKQLGLSSIAAAVATMCISSASSAGAMTIMFGKQAM 97
           LGG + P+P PLG  +QLG SSI AAVA MC+SSASS GA+T M G+QAM
Sbjct: 54  LGGISAPMPFPLGYLRQLGRSSIIAAVAIMCMSSASSEGAITTMLGRQAM 103

[Close]

BLAST of MELO3C032094 vs. ExPASy TrEMBL
Match: A0A0A9K7D2 (Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 87  MTIMFGKQAMYVISNAPQCVGPSAPTKPALSIAKRTGS 125
           MT M G+ AMYV SNAPQCVGPSAPT PALS+A  TGS
Sbjct: 1   MTTMLGRHAMYVTSNAPQCVGPSAPTSPALSMANLTGS 38

The following BLAST results are available for this feature:

BLAST of MELO3C032094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1875171.1	2.4e-13	84.91	hypothetical protein Lal_00007787 [Lupinus albus]	[more]
KMT09296.1	1.4e-08	68.33	hypothetical protein BVRB_6g133950 [Beta vulgaris subsp. vulgaris]	[more]
GER38040.1	4.8e-06	66.00	tannin-related R2R3 MYB transcription factor [Striga asiatica]	[more]

BLAST of MELO3C032094 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MJN2	1.2e-13	84.91	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00007787 PE=4 SV=1	[more]
A0A0A9NGY5	4.5e-10	75.00	Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9N9X4	4.5e-10	75.00	Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A5A7PYW9	2.3e-06	66.00	Tannin-related R2R3 MYB transcription factor OS=Striga asiatica OX=4170 GN=STAS_...	[more]
A0A0A9K7D2	4.0e-06	76.32	Dxs1 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of MELO3C032094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032094.1	MELO3C032094.1	mRNA