MELO3C032051.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032051.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Protein ROOT HAIR DEFECTIVE 3
Location	chr06: 16089502 .. 16090211 (-)
RNA-Seq Expression	MELO3C032051.jh1
Synteny	MELO3C032051.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTAGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTGCACTTCTATGCCCTTTTTGGTTTTTATGTGTTTCTTTTGCTTGTACTTTCGTTTATTTTTTTCCTTTTTTATTTTTTATTTATTTTTTATTTTTCCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTGCAGATACACGTATGTGTATGTATATCTGTATGTGTGTGTATGTAAGGATATGTTTATATTCGCATACATATGTATCTTAGCTTTATTGTTTCCACATTGCCTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTGTCACGATATTGGCCATGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTATTCAGGTATTCCCTTTAATCTGGTTGGGGGTCATGGTGTATCTTTTATAGTATTAATTTAATAAATTTTAGTTGTTGTTGTATGCAGGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGGTTTGTTAATATTTCCTGGGTAGTTTATATCTTGAGCTGTTGTAGAAAAACCATATGTTGCAAGCTTTTAATTTTCTAATTTTCTTTATTGCTTTTGTTATTTTTTTCTGTATGTAGATGCCATTGGAAAATTTAGAGTCTGTTATTAGAGGATGTACATAAGGTAAATTATTG

mRNA sequence

ATGGATTTAGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTGCACTTCTATGCCCTTTTTGGTTTTTATGTGGTGTCACGATATTGGCCATGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATGCCATTGGAAAATTTAGAGTCTGTTATTAGAGGATGTACATAAGGTAAATTATTG

Coding sequence (CDS)

ATGGAAGAGAGCGAGGAGAGGTGCACTTCTATGCCCTTTTTGGTTTTTATGTGGTGTCACGATATTGGCCATGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATGCCATTGGAAAATTTAGAGTCTGTTATTAGAGGATGTACATAA

Protein sequence

MEESEERCTSMPFLVFMWCHDIGHEQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRMPLENLESVIRGCT

Homology

[Close]

BLAST of MELO3C032051.jh1 vs. NCBI nr
Match: VFR00176.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 95.5 bits (236), Expect = 4.12e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTV   MMRLFSP KTTLMFVIRDKTR PLENLE V+R
Sbjct: 62  LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 119

[Close]

BLAST of MELO3C032051.jh1 vs. NCBI nr
Match: RZS11876.1 (hypothetical protein BHM03_00043247 [Ensete ventricosum])

HSP 1 Score: 95.5 bits (236), Expect = 4.20e-22
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIRG 69
           L+ MWCHDIG EQAANKPLLKTV   MMRLFSP KTTL+FVIRDKT+ PLENLE ++RG
Sbjct: 128 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPILRG 186

[Close]

BLAST of MELO3C032051.jh1 vs. NCBI nr
Match: KAG9132050.1 (hypothetical protein Leryth_017822 [Lithospermum erythrorhizon])

HSP 1 Score: 95.1 bits (235), Expect = 6.78e-22
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTV   MMRLFSP KTTLMFVIRDKTR PLENLE ++R
Sbjct: 129 LINMWCHDIGREQAANKPLLKTVFQAMMRLFSPRKTTLMFVIRDKTRTPLENLEPILR 186

[Close]

BLAST of MELO3C032051.jh1 vs. NCBI nr
Match: AQK96218.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ11121.1 hypothetical protein Zm00014a_034991 [Zea mays] >PWZ11122.1 Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 97.8 bits (242), Expect = 1.18e-21
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLE ++R
Sbjct: 126 LINMWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 180

[Close]

BLAST of MELO3C032051.jh1 vs. NCBI nr
Match: ONM40596.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >ONM40602.1 Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 97.8 bits (242), Expect = 1.18e-21
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLE ++R
Sbjct: 135 LINMWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 189

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLE V+R
Sbjct: 126 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 183

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-19
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTT++FVIRDKTR PLENLE V+R
Sbjct: 131 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 188

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTTL+FVIRDKTR PLE+LE V+R
Sbjct: 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVLR 186

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-18
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTTL+FVIRDK++ PLENLE ++R
Sbjct: 126 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILR 183

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VM+RLFSP KTTL+FVIRDKT+ P+E LE  +R
Sbjct: 129 LINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALR 186

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL
Match: A0A1J3DQ18 (Protein ROOT HAIR DEFECTIVE 3-like protein 1 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR8283_c1_g1_i1_g.26849 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.70e-23
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14 LVFMWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
          L+ MWCHDIG EQAANKPLLKTV   MMRLFSP KTT++FVIRDKTR PLENLE V+R
Sbjct: 41 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 98

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL
Match: A0A484NFH5 (GB1/RHD3-type G domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS41951 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.99e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTV   MMRLFSP KTTLMFVIRDKTR PLENLE V+R
Sbjct: 62  LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 119

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL
Match: A0A0A9CXG3 (GB1/RHD3-type G domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.41e-22
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 17 MWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
          MWCHDIG EQAANKPLLKTV   MMRLFSP KTTL+FVIRDK+R PLENLE ++R
Sbjct: 1  MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 55

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL
Match: A0A0A9UYH0 (GB1/RHD3-type G domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.84e-22
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 17 MWCHDIGHEQAANKPLLKTV---MMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
          MWCHDIG EQAANKPLLKTV   MMRLFSP KTTL+FVIRDK+R PLENLE ++R
Sbjct: 1  MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 55

[Close]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL
Match: A0A3L6DU23 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_034991 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.71e-22
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 68
           L+ MWCHDIG EQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLE ++R
Sbjct: 126 LINMWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 180

[Close]

BLAST of MELO3C032051.jh1 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLE V+R
Sbjct: 62  LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 119

[Close]

BLAST of MELO3C032051.jh1 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLE V+R
Sbjct: 126 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 183

[Close]

BLAST of MELO3C032051.jh1 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-20
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VMMRLFSP KTT++FVIRDKTR PLENLE V+R
Sbjct: 131 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 188

[Close]

BLAST of MELO3C032051.jh1 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-18
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 14  LVFMWCHDIGHEQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRMPLENLESVIR 69
           L+ MWCHDIG EQAANKPLLKT   VM+RLFSP KTTL+FVIRDKT+ P+E LE  +R
Sbjct: 129 LINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALR 186

The following BLAST results are available for this feature:

BLAST of MELO3C032051.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
VFR00176.1	4.12e-22	82.76	unnamed protein product [Cuscuta campestris]	[more]
RZS11876.1	4.20e-22	77.97	hypothetical protein BHM03_00043247 [Ensete ventricosum]	[more]
KAG9132050.1	6.78e-22	81.03	hypothetical protein Leryth_017822 [Lithospermum erythrorhizon]	[more]
AQK96218.1	1.18e-21	81.82	Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ11121.1 hypothetical protein Zm0001...	[more]
ONM40596.1	1.18e-21	81.82	Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >ONM40602.1 Protein ROOT HAIR DEFECTIVE...	[more]

BLAST of MELO3C032051.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93042	2.0e-19	82.76	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q9SSN0	7.4e-19	79.31	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
Q2QMH2	1.7e-18	79.31	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0JLS6	3.7e-18	75.86	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]
Q9FKE9	1.2e-16	72.41	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]

BLAST of MELO3C032051.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J3DQ18	3.70e-23	79.31	Protein ROOT HAIR DEFECTIVE 3-like protein 1 (Fragment) OS=Noccaea caerulescens ...	[more]
A0A484NFH5	1.99e-22	82.76	GB1/RHD3-type G domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCA...	[more]
A0A0A9CXG3	2.41e-22	80.00	GB1/RHD3-type G domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1	[more]
A0A0A9UYH0	2.84e-22	80.00	GB1/RHD3-type G domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1	[more]
A0A3L6DU23	5.71e-22	81.82	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_034991 PE=...	[more]

BLAST of MELO3C032051.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13870.2	1.4e-20	82.76	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	1.4e-20	82.76	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT1G72960.1	5.3e-20	79.31	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	8.4e-18	72.41	Root hair defective 3 GTP-binding protein (RHD3)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 13..68 e-value: 3.3E-21 score: 75.2
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 13..68
None	No IPR available	PANTHER	PTHR45923:SF15	PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG	coord: 13..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032051.jh1.t1	MELO3C032051.jh1.t1	mRNA