MELO3C031828 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031828
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	cell wall protein DAN4-like
Location	chr06: 21925255 .. 21925818 (+)
RNA-Seq Expression	MELO3C031828
Synteny	MELO3C031828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGATCCCTTCTTTCCATCTTCTTTTTCTTCCTCATAATCTCTTACATTAATTATCATAATGGCTTATCAATCTCTTTGCTTTCCTGGCTCTCATCATCGTTGCCGTCACCGGTGCTGTTGCTCAGGTTCCTTCTACCTCCCCCACCTCCACTCTAGCTACCATGACCTCCTCATTTGATTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCACCACCACCTCCTCAGCTGATGCTTCATCAATCTCAGCAACTCCAGCATTCTCACCCGATTCCTCTGCTCAATTGCCAACGACCACAACATCTCCCATCGGTTCTCCTTTTGCCGAGACTTCTCGCTTGTTTACAAATGGTTTTTTGGCTGATGGATTCATGGAAAGGAGATTCAAATCTCAACTTTTGGTAGAGACTAATATTATTTTTATCCTTTGAGCTATGCTCCTCGAGGCAATGTTGTCATCGAGTCATAATTTTACTTTTCTCTTTTATTAAGTTTCATTCCATTGTAATCAATTTTCATTCCAATTTAATCAAATACATAAAATATACACAAATGT

mRNA sequence

ATCGATCCCTTCTTTCCATCTTCTTTTTCTTCCTCATAATCTCTTACATTAATTATCATAATGGCTTATCAATCTCTTTGCTTTCCTGGCTCTCATCATCGTTGCCGTCACCGGTGCTGTTGCTCAGGTTCCTTCTACCTCCCCCACCTCCACTCTAGCTACCATGACCTCCTCATTTGATTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCACCACCACCTCCTCAGCTGATGCTTCATCAATCTCAGCAACTCCAGCATTCTCACCCGATTCCTCTGCTCAATTGCCAACGACCACAACATCTCCCATCGGTTCTCCTTTTGCCGAGACTTCTCGCTTGTTTACAAATGGTTTTTTGGCTGATGGATTCATGGAAAGGAGATTCAAATCTCAACTTTTGGTAGAGACTAATATTATTTTTATCCTTTGAGCTATGCTCCTCGAGGCAATGTTGTCATCGAGTCATAATTTTACTTTTCTCTTTTATTAAGTTTCATTCCATTGTAATCAATTTTCATTCCAATTTAATCAAATACATAAAATATACACAAATGT

Coding sequence (CDS)

ATGACCTCCTCATTTGATTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCACCACCACCTCCTCAGCTGATGCTTCATCAATCTCAGCAACTCCAGCATTCTCACCCGATTCCTCTGCTCAATTGCCAACGACCACAACATCTCCCATCGGTTCTCCTTTTGCCGAGACTTCTCGCTTGTTTACAAATGGTTTTTTGGCTGATGGATTCATGGAAAGGAGATTCAAATCTCAACTTTTGGTAGAGACTAATATTATTTTTATCCTTTGA

Protein sequence

MTSSFDSSASSSSSLDSTTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPFAETSRLFTNGFLADGFMERRFKSQLLVETNIIFIL

Homology

[Close]

BLAST of MELO3C031828 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 77/95 (81.05%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MTSSFDSSASSSSSLDS----TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPF 60
           MTSSFDSS SSSSSLDS    TTTTTSS D SSIS  PAFSPDSSAQ PTT TSP GS  
Sbjct: 35  MTSSFDSSTSSSSSLDSTTTPTTTTTSSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTS 94

Query: 61  AETSRLFTNGFLADGFMERRFKSQLLVETNIIFIL 92
           AETSRLF+NGFLADGFMERRFK QLLVE NII IL
Sbjct: 95  AETSRLFSNGFLADGFMERRFKYQLLVENNIILIL 129

[Close]

BLAST of MELO3C031828 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-12
Identity = 57/70 (81.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1   MTSSFDSSASSSSSLDS---TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPFA 60
           MTSS DSS SSSSSLDS   TTTTTSSADASSIS  PAFSPDSSAQ PTT TSP GSP  
Sbjct: 35  MTSSVDSSTSSSSSLDSTTTTTTTTSSADASSISVAPAFSPDSSAQSPTTATSPTGSPSG 94

Query: 61  ETSRLFTNGF 68
           ETSR FTNGF
Sbjct: 95  ETSRFFTNGF 104

[Close]

BLAST of MELO3C031828 vs. NCBI nr
Match: KAA0056279.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 3   SSFDSSASSSSSLDST---TTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPFAET 62
           ++  SSASSSSSLDST   TTT SSADASSIS  PAFSPDSSAQ PTT TSP GSP AET
Sbjct: 33  ATMTSSASSSSSLDSTTIPTTTISSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAET 92

Query: 63  SRLFTNGF 68
           SRLFTNGF
Sbjct: 93  SRLFTNGF 100

[Close]

BLAST of MELO3C031828 vs. NCBI nr
Match: KAA0056284.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MTSSFDSSASSSSSLDS----TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPF 60
          MTSSFDSS SSSSSLDS    TTTTTSS D SSIS  PAFSPDSSAQ PTT TSP  S  
Sbjct: 1  MTSSFDSSTSSSSSLDSTTTPTTTTTSSIDDSSISIAPAFSPDSSAQSPTTATSPTDSAS 60

Query: 61 AETSRLFTNGF 68
          AETSRLF+NGF
Sbjct: 61 AETSRLFSNGF 71

[Close]

BLAST of MELO3C031828 vs. NCBI nr
Match: KGN58213.1 (hypothetical protein Csa_017497 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-08
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 7   SSASSSSSLDSTTTTT-----SSADASSISATPAFSPDSSAQLPTTTTSPIGSPFAETSR 66
           SS+SSSSSLDSTTTTT     SS D+ SISA P  SPDSSAQ PTT TSP GSP  ETSR
Sbjct: 42  SSSSSSSSLDSTTTTTTTSSGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSR 101

Query: 67  LFTNGF 68
           LF+NGF
Sbjct: 102 LFSNGF 107

[Close]

BLAST of MELO3C031828 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.6e-23
Identity = 77/95 (81.05%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MTSSFDSSASSSSSLDS----TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPF 60
           MTSSFDSS SSSSSLDS    TTTTTSS D SSIS  PAFSPDSSAQ PTT TSP GS  
Sbjct: 35  MTSSFDSSTSSSSSLDSTTTPTTTTTSSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTS 94

Query: 61  AETSRLFTNGFLADGFMERRFKSQLLVETNIIFIL 92
           AETSRLF+NGFLADGFMERRFK QLLVE NII IL
Sbjct: 95  AETSRLFSNGFLADGFMERRFKYQLLVENNIILIL 129

[Close]

BLAST of MELO3C031828 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 57/70 (81.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1   MTSSFDSSASSSSSLDS---TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPFA 60
           MTSS DSS SSSSSLDS   TTTTTSSADASSIS  PAFSPDSSAQ PTT TSP GSP  
Sbjct: 35  MTSSVDSSTSSSSSLDSTTTTTTTTSSADASSISVAPAFSPDSSAQSPTTATSPTGSPSG 94

Query: 61  ETSRLFTNGF 68
           ETSR FTNGF
Sbjct: 95  ETSRFFTNGF 104

[Close]

BLAST of MELO3C031828 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-11
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 3   SSFDSSASSSSSLDST---TTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPFAET 62
           ++  SSASSSSSLDST   TTT SSADASSIS  PAFSPDSSAQ PTT TSP GSP AET
Sbjct: 33  ATMTSSASSSSSLDSTTIPTTTISSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAET 92

Query: 63  SRLFTNGF 68
           SRLFTNGF
Sbjct: 93  SRLFTNGF 100

[Close]

BLAST of MELO3C031828 vs. ExPASy TrEMBL
Match: A0A5A7UM65 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00560 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MTSSFDSSASSSSSLDS----TTTTTSSADASSISATPAFSPDSSAQLPTTTTSPIGSPF 60
          MTSSFDSS SSSSSLDS    TTTTTSS D SSIS  PAFSPDSSAQ PTT TSP  S  
Sbjct: 1  MTSSFDSSTSSSSSLDSTTTPTTTTTSSIDDSSISIAPAFSPDSSAQSPTTATSPTDSAS 60

Query: 61 AETSRLFTNGF 68
          AETSRLF+NGF
Sbjct: 61 AETSRLFSNGF 71

[Close]

BLAST of MELO3C031828 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.6e-08
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 7   SSASSSSSLDSTTTTT-----SSADASSISATPAFSPDSSAQLPTTTTSPIGSPFAETSR 66
           SS+SSSSSLDSTTTTT     SS D+ SISA P  SPDSSAQ PTT TSP GSP  ETSR
Sbjct: 42  SSSSSSSSLDSTTTTTTTSSGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSR 101

Query: 67  LFTNGF 68
           LF+NGF
Sbjct: 102 LFSNGF 107

The following BLAST results are available for this feature:

BLAST of MELO3C031828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450206.1	1.4e-22	81.05	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]
KAA0056285.1	2.9e-12	81.43	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
KAA0056279.1	1.6e-10	79.41	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall pro...	[more]
KAA0056284.1	2.7e-10	77.46	cell wall protein DAN4-like [Cucumis melo var. makuwa]	[more]
KGN58213.1	9.5e-08	72.73	hypothetical protein Csa_017497 [Cucumis sativus]	[more]

BLAST of MELO3C031828 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPQ2	6.6e-23	81.05	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A5D3C1H7	1.4e-12	81.43	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3C1I1	7.6e-11	79.41	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UM65	1.3e-10	77.46	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0L8Q5	4.6e-08	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]

BLAST of MELO3C031828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031828.1	MELO3C031828.1	mRNA