MELO3C031712 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031712
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr11: 14206734 .. 14207193 (+)
RNA-Seq Expression	MELO3C031712
Synteny	MELO3C031712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCATTCCGTTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGAAGTTAATATAAGTTACCAGAAAACTTGGAGGGCAAAAGAACATATGGTAAAGATATTACACGGTGACACAATTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATTTAACCCAGGTATGATCAGTTTTTTATATCAAATTTTTATTGATTTGCAAATAGATGTAGATAGACTAATATCAAAGTCTATCTAGATAGATGTGGATATTCTTTCTATTCTTCTTTGTTTGTGCTGATAGAAATGTGTTTTTAATTATTATAGGTACATGCACTGCTTTAGAAATGGATAATAGTAGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGATACATTTTTTAAG

mRNA sequence

ATGTCTACTGATCATTCCGTTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGAAGTTAATATAAGTTACCAGAAAACTTGGAGGGCAAAAGAACATATGGTAAAGATATTACACGGTGACACAATTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATTTAACCCAGAAATGGATAATAGTAGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGATACATTTTTTAAG

Coding sequence (CDS)

ATGTCTACTGATCATTCCGTTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGAAGTTAATATAAGTTACCAGAAAACTTGGAGGGCAAAAGAACATATGGTAAAGATATTACACGGTGACACAATTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATTTAACCCAGAAATGGATAATAGTAGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGATACATTTTTTAAG

Protein sequence

MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEFNPEMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK

Homology

[Close]

BLAST of MELO3C031712 vs. NCBI nr
Match: KAA0033561.1 (uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.4e-42
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS D S+PKEIVHKARTNL VNISY+K WRAKEHMVKILHGDT+ESYALIPRFFDKLV+ 
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

[Close]

BLAST of MELO3C031712 vs. NCBI nr
Match: TYJ95626.1 (uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.4e-42
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS D S+PKEIVHKARTNL VNISY+K WRAKEHMVKILHGDT+ESYALIPRFFDKLV+ 
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

[Close]

BLAST of MELO3C031712 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MST+ S+P EIVHKARTNL +NISYQK WRAKEHMVKILHGDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYC+PII VD  F K
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

[Close]

BLAST of MELO3C031712 vs. NCBI nr
Match: KAA0062291.1 (hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK26695.1 hypothetical protein E5676_scaffold313G003560 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS+  S+PKEIVHKARTNL VNISYQK WRAKEHM+KIL GDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSSYRSIPKEIVHKARTNLRVNISYQKAWRAKEHMIKILLGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      E+D+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 79  NPGTCTALEIDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 123

[Close]

BLAST of MELO3C031712 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MST+ S+P EIVHKARTNL +NISYQK WRAKEHMVKILHGDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYC+PII VD  F K
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

[Close]

BLAST of MELO3C031712 vs. ExPASy TrEMBL
Match: A0A5A7SVW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G001160 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS D S+PKEIVHKARTNL VNISY+K WRAKEHMVKILHGDT+ESYALIPRFFDKLV+ 
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

[Close]

BLAST of MELO3C031712 vs. ExPASy TrEMBL
Match: A0A5D3B9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00450 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS D S+PKEIVHKARTNL VNISY+K WRAKEHMVKILHGDT+ESYALIPRFFDKLV+ 
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

[Close]

BLAST of MELO3C031712 vs. ExPASy TrEMBL
Match: A0A5A7V9D5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003560 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MS+  S+PKEIVHKARTNL VNISYQK WRAKEHM+KIL GDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSSYRSIPKEIVHKARTNLRVNISYQKAWRAKEHMIKILLGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      E+D+S HFKFCFMAFGASIEGWKYCRPIISVD TF K
Sbjct: 79  NPGTCTALEIDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 123

[Close]

BLAST of MELO3C031712 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MST+ S+P EIVHKARTNL +NISYQK WRAKEHMVKILHGDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYC+PII VD  F K
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

[Close]

BLAST of MELO3C031712 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MSTDHSVPKEIVHKARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEF 60
           MST+ S+P EIVHKARTNL +NISYQK WRAKEHMVKILHGDT+ESYALIPRFFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDNSSHFKFCFMAFGASIEGWKYCRPIISVDDTFFK 100
           NP      EMD+S HFKFCFMAFGASIEGWKYC+PII VD  F K
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

[Close]

BLAST of MELO3C031712 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-05
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 31  AKEHMVKILHGDTIESYALIPRFFDKLVEFNP-----EMDNSSH------FKFCFMAFGA 90
           AK   +K   GD  +S+ LIP+    L   N      + D+ +H      F+  F AF  
Sbjct: 311 AKVKAIKRFFGDWDQSFRLIPKLMSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQ 370

Query: 91  SIEGWKYCRPIISVD 95
           SI+G+++CRP+I VD
Sbjct: 371 SIQGFQHCRPLIVVD 385

[Close]

BLAST of MELO3C031712 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 31  AKEHMVKILHGDTIESYALIPRFFDKLVEFNPEM--------DNSSHFKFC--FMAFGAS 90
           AKE  +K + GD  +S+   P+    L   N  +         N +   FC  F AF  S
Sbjct: 316 AKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQS 375

Query: 91  IEGWKYCRPIISVD 95
           IEG+++CRP+I VD
Sbjct: 376 IEGFQHCRPLIVVD 389

[Close]

BLAST of MELO3C031712 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 28/92 (30.43%), Postives = 45/92 (48.91%), Query Frame = 0


Query: 14  KARTNLEVNISYQKTWRAKEHMVKILHGDTIESYALIPRFFDKLVEFN-----------P 73
           K +T  E+  S  K    K  ++K + GD  +S+ ++P+        N           P
Sbjct: 294 KEKTGYELQTS--KMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFP 353

Query: 74  EMDNSSHFKFCFMAFGASIEGWKYCRPIISVD 95
             D +S F+  F +F  SIEG+++CRP+I VD
Sbjct: 354 NPDFAS-FRGVFWSFSQSIEGFQHCRPLIVVD 382

The following BLAST results are available for this feature:

BLAST of MELO3C031712 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C031712 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033561.1	8.4e-42	81.90	uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa]	[more]
TYJ95626.1	8.4e-42	81.90	uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa]	[more]
TYK02872.1	1.6e-40	79.05	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0062291.1	1.6e-40	80.00	hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK2669...	[more]
KAA0037812.1	1.6e-40	79.05	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVW4	4.1e-42	81.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9S0	4.1e-42	81.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V9D5	7.7e-41	80.00	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7T2W2	7.7e-41	79.05	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	7.7e-41	79.05	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C031712 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	6.7e-05	34.67	MuDR family transposase	[more]
AT1G64255.1	1.1e-04	35.14	MuDR family transposase	[more]
AT1G64260.1	3.3e-04	30.43	MuDR family transposase	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031712.1	MELO3C031712.1	mRNA