MELO3C031674 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031674
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich cell wall structural protein 1.0-like
Location	chr06: 3557546 .. 3558004 (-)
RNA-Seq Expression	MELO3C031674
Synteny	MELO3C031674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

mRNA sequence

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Coding sequence (CDS)

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Protein sequence

MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRGGTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGGGTGRLLGNSGESHESIERERDVEYSLKERNWE

Homology

[Close]

BLAST of MELO3C031674 vs. NCBI nr
Match: XP_016898954.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]

BLAST of MELO3C031674 vs. NCBI nr
Match: KAA0049320.1 (glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.0e-67
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

[Close]

BLAST of MELO3C031674 vs. NCBI nr
Match: XP_011652754.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 4.7e-52
Identity = 130/152 (85.53%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYV  T+  GD DVNISGPKGLGG GGLGG SSGGDGGKISG GTGEPGHGGSISGGLRG
Sbjct: 1   MYVRATKPGGDADVNISGPKGLGGLGGLGGTSSGGDGGKISGSGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           G+GTSIPGGDG+GGFGNSGPGG G G SGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GSGTSIPGGDGNGGFGNSGPGGLG-GNSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGR+ GNSGES ES E ERD  YSLK RNWE
Sbjct: 121 GTGRISGNSGESPESRESERDAGYSLKGRNWE 151

[Close]

BLAST of MELO3C031674 vs. ExPASy TrEMBL
Match: A0A1S4DSJ3 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC107990388 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.0e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]

BLAST of MELO3C031674 vs. ExPASy TrEMBL
Match: A0A5A7U1W0 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005620 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-67
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 153
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

The following BLAST results are available for this feature:

BLAST of MELO3C031674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898954.1	1.2e-68	100.00	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
KAA0049320.1	4.0e-67	98.68	glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa]	[more]
XP_011652754.1	4.7e-52	85.53	glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]

BLAST of MELO3C031674 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSJ3	6.0e-69	100.00	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7U1W0	1.9e-67	98.68	Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of MELO3C031674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031674.1	MELO3C031674.1	mRNA