MELO3C031491 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031491
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ABC transporter C family member 2-like
Location	chr05: 22110841 .. 22111023 (+)
RNA-Seq Expression	MELO3C031491
Synteny	MELO3C031491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTCGCATGGATGAATCACATAATGAAGATAGGATACAAAAGACCGTTGACAAAGAATGATGTATGGAAATTGGATATATGGGACCAACTGAAACATCATTCAATCGATGTGTTTGTTTACCTCTCCCACTCAACAACAACAACAGCAGCTTTAGTTTTCGTTCGAAGAAGCTTTTAG

mRNA sequence

ATGACTTTCGCATGGATGAATCACATAATGAAGATAGGATACAAAAGACCGTTGACAAAGAATGATGTATGGAAATTGGATATATGGGACCAACTGAAACATCATTCAATCGATGTGTTTGTTTACCTCTCCCACTCAACAACAACAACAGCAGCTTTAGTTTTCGTTCGAAGAAGCTTTTAG

Coding sequence (CDS)

ATGACTTTCGCATGGATGAATCACATAATGAAGATAGGATACAAAAGACCGTTGACAAAGAATGATGTATGGAAATTGGATATATGGGACCAACTGAAACATCATTCAATCGATGTGTTTGTTTACCTCTCCCACTCAACAACAACAACAGCAGCTTTAGTTTTCGTTCGAAGAAGCTTTTAG

Protein sequence

MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQLKHHSIDVFVYLSHSTTTTAALVFVRRSF

Homology

[Close]

BLAST of MELO3C031491 vs. NCBI nr
Match: XP_008460280.1 (PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 2-like, partial [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           MTFAWMNHI+KIGYKRPLT+ DVWKLD WDQ
Sbjct: 240 MTFAWMNHIIKIGYKRPLTEKDVWKLDTWDQ 270

[Close]

BLAST of MELO3C031491 vs. NCBI nr
Match: XP_011656526.1 (ABC transporter C family member 2 [Cucumis sativus] >XP_031743698.1 ABC transporter C family member 2 [Cucumis sativus] >KAE8646615.1 hypothetical protein Csa_004851 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 24/31 (77.42%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GYKRPLT+ DVWKLD+WD+
Sbjct: 238 ITFAWMDHIMKLGYKRPLTEKDVWKLDMWDR 268

[Close]

BLAST of MELO3C031491 vs. NCBI nr
Match: XP_038877680.1 (ABC transporter C family member 2-like [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 23/31 (74.19%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GY+RPLT+ D+WKLD+WDQ
Sbjct: 238 ITFAWMDHIMKLGYERPLTEKDIWKLDMWDQ 268

[Close]

BLAST of MELO3C031491 vs. NCBI nr
Match: XP_008445683.2 (PREDICTED: ABC transporter C family member 2-like [Cucumis melo] >XP_016900114.1 PREDICTED: ABC transporter C family member 2-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GYKRPLT+ D WKLD+WD+
Sbjct: 238 ITFAWMDHIMKLGYKRPLTEKDFWKLDMWDR 268

[Close]

BLAST of MELO3C031491 vs. NCBI nr
Match: TYK05157.1 (ABC transporter C family member 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GYKRPLT+ D WKLD+WD+
Sbjct: 238 ITFAWMDHIMKLGYKRPLTEKDFWKLDMWDR 268

[Close]

BLAST of MELO3C031491 vs. ExPASy Swiss-Prot
Match: Q42093 (ABC transporter C family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQLKHHSIDVFVYLSHS 47
           F+WMN +M +G KRPLT+ DVW LD WDQ +     +F    HS
Sbjct: 239 FSWMNPLMTLGSKRPLTEKDVWYLDTWDQTE----TLFTSFQHS 278

[Close]

BLAST of MELO3C031491 vs. ExPASy Swiss-Prot
Match: Q9C8H1 (ABC transporter C family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCC11 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-05
Identity = 16/29 (55.17%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F+WM  +M++GY++P+T+ DVW+LD WDQ
Sbjct: 240 FSWMTPLMQLGYRKPITERDVWQLDQWDQ 268

[Close]

BLAST of MELO3C031491 vs. ExPASy Swiss-Prot
Match: Q9C8G9 (ABC transporter C family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-05
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F+W+N +M +G KRPLT+ DVW LD WD+
Sbjct: 239 FSWLNPLMTLGSKRPLTEKDVWHLDTWDK 267

[Close]

BLAST of MELO3C031491 vs. ExPASy Swiss-Prot
Match: Q9C8H0 (ABC transporter C family member 12 OS=Arabidopsis thaliana OX=3702 GN=ABCC12 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.7e-05
Identity = 15/29 (51.72%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F W+  +M++GY++P+T+ DVW+LD WDQ
Sbjct: 240 FGWITPLMQLGYRKPITEKDVWQLDKWDQ 268

[Close]

BLAST of MELO3C031491 vs. ExPASy TrEMBL
Match: A0A1S3CC86 (LOW QUALITY PROTEIN: ABC transporter C family member 2-like OS=Cucumis melo OX=3656 GN=LOC103499152 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           MTFAWMNHI+KIGYKRPLT+ DVWKLD WDQ
Sbjct: 240 MTFAWMNHIIKIGYKRPLTEKDVWKLDTWDQ 270

[Close]

BLAST of MELO3C031491 vs. ExPASy TrEMBL
Match: A0A1S3BCT7 (ABC transporter C family member 2-like OS=Cucumis melo OX=3656 GN=LOC103488640 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-07
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GYKRPLT+ D WKLD+WD+
Sbjct: 238 ITFAWMDHIMKLGYKRPLTEKDFWKLDMWDR 268

[Close]

BLAST of MELO3C031491 vs. ExPASy TrEMBL
Match: A0A5D3C025 (ABC transporter C family member 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00140 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-07
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GYKRPLT+ D WKLD+WD+
Sbjct: 238 ITFAWMDHIMKLGYKRPLTEKDFWKLDMWDR 268

[Close]

BLAST of MELO3C031491 vs. ExPASy TrEMBL
Match: A0A6J1IAT6 (ABC transporter C family member 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471790 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM+HIMK+GY+RPLT+ D+WKLD WD+
Sbjct: 238 ITFAWMDHIMKLGYRRPLTEKDIWKLDTWDR 268

[Close]

BLAST of MELO3C031491 vs. ExPASy TrEMBL
Match: A0A6J1CYS4 (ABC transporter C family member 2-like OS=Momordica charantia OX=3673 GN=LOC111015826 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 23/31 (74.19%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MTFAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           +TFAWM++IMK+GYKRPLT+ DVWKLD+WD+
Sbjct: 237 ITFAWMDYIMKLGYKRPLTEKDVWKLDMWDR 267

[Close]

BLAST of MELO3C031491 vs. TAIR 10
Match: AT2G34660.1 (multidrug resistance-associated protein 2 )

HSP 1 Score: 50.4 bits (119), Expect = 5.7e-07
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQLKHHSIDVFVYLSHS 47
           F+WMN +M +G KRPLT+ DVW LD WDQ +     +F    HS
Sbjct: 239 FSWMNPLMTLGSKRPLTEKDVWYLDTWDQTE----TLFTSFQHS 278

[Close]

BLAST of MELO3C031491 vs. TAIR 10
Match: AT2G34660.2 (multidrug resistance-associated protein 2 )

HSP 1 Score: 50.4 bits (119), Expect = 5.7e-07
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQLKHHSIDVFVYLSHS 47
           F+WMN +M +G KRPLT+ DVW LD WDQ +     +F    HS
Sbjct: 239 FSWMNPLMTLGSKRPLTEKDVWYLDTWDQTE----TLFTSFQHS 278

[Close]

BLAST of MELO3C031491 vs. TAIR 10
Match: AT1G30420.1 (multidrug resistance-associated protein 12 )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 16/29 (55.17%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F+WM  +M++GY++P+T+ DVW+LD WDQ
Sbjct: 240 FSWMTPLMQLGYRKPITERDVWQLDQWDQ 268

[Close]

BLAST of MELO3C031491 vs. TAIR 10
Match: AT1G30400.1 (multidrug resistance-associated protein 1 )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F+W+N +M +G KRPLT+ DVW LD WD+
Sbjct: 239 FSWLNPLMTLGSKRPLTEKDVWHLDTWDK 267

[Close]

BLAST of MELO3C031491 vs. TAIR 10
Match: AT1G30400.2 (multidrug resistance-associated protein 1 )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 3   FAWMNHIMKIGYKRPLTKNDVWKLDIWDQ 32
           F+W+N +M +G KRPLT+ DVW LD WD+
Sbjct: 239 FSWLNPLMTLGSKRPLTEKDVWHLDTWDK 267

The following BLAST results are available for this feature:

BLAST of MELO3C031491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460280.1	4.8e-08	87.10	PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 2-like, partial ...	[more]
XP_011656526.1	5.3e-07	77.42	ABC transporter C family member 2 [Cucumis sativus] >XP_031743698.1 ABC transpor...	[more]
XP_038877680.1	6.9e-07	74.19	ABC transporter C family member 2-like [Benincasa hispida]	[more]
XP_008445683.2	2.0e-06	74.19	PREDICTED: ABC transporter C family member 2-like [Cucumis melo] >XP_016900114.1...	[more]
TYK05157.1	2.0e-06	74.19	ABC transporter C family member 2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42093	8.0e-06	50.00	ABC transporter C family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCC2 PE=1 ...	[more]
Q9C8H1	1.8e-05	55.17	ABC transporter C family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCC11 PE=...	[more]
Q9C8G9	5.2e-05	58.62	ABC transporter C family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 ...	[more]
Q9C8H0	6.7e-05	51.72	ABC transporter C family member 12 OS=Arabidopsis thaliana OX=3702 GN=ABCC12 PE=...	[more]

BLAST of MELO3C031491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CC86	2.3e-08	87.10	LOW QUALITY PROTEIN: ABC transporter C family member 2-like OS=Cucumis melo OX=3...	[more]
A0A1S3BCT7	9.8e-07	74.19	ABC transporter C family member 2-like OS=Cucumis melo OX=3656 GN=LOC103488640 P...	[more]
A0A5D3C025	9.8e-07	74.19	ABC transporter C family member 2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1IAT6	1.3e-06	70.97	ABC transporter C family member 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1CYS4	1.3e-06	74.19	ABC transporter C family member 2-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of MELO3C031491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34660.1	5.7e-07	50.00	multidrug resistance-associated protein 2	[more]
AT2G34660.2	5.7e-07	50.00	multidrug resistance-associated protein 2	[more]
AT1G30420.1	1.3e-06	55.17	multidrug resistance-associated protein 12	[more]
AT1G30400.1	3.7e-06	58.62	multidrug resistance-associated protein 1	[more]
AT1G30400.2	3.7e-06	58.62	multidrug resistance-associated protein 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031491.1	MELO3C031491.1	mRNA