Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCTGATGAATTGATAGGAACAAGAACCACTCGGGTAAATGAAGGTAGGTATATTTCGAGCGGGTCTAAGTGGAAACGTGGAGGACAGGCTGCAGACAGTGGAGATGTATTCCGCACTGCGATTGAGTACAGAAATGAACAACTGAACCGCATTGCTGAATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACATCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTAAGCTAACATTGATGGATAGGTGTTGCTTAATGCATATACTTATGCGTAATGTCGATGACATGAAAGCTTTCCTTGACGTTCCAGACAATATGAAGTACTCGTACTGCAACATCATTCTTCAAGAAAACCGATGA
mRNA sequence
ATGTCGCCTGATGAATTGATAGGAACAAGAACCACTCGGGTAAATGAAGGTAGGTATATTTCGAGCGGGTCTAAGTGGAAACGTGGAGGACAGGCTGCAGACAGTGGAGATGTATTCCGCACTGCGATTGAGTACAGAAATGAACAACTGAACCGCATTGCTGAATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACATCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTAAGCTAACATTGATGGATAGGTGTTGCTTAATGCATATACTTATGCGTAATGTCGATGACATGAAAGCTTTCCTTGACGTTCCAGACAATATGAAGTACTCGTACTGCAACATCATTCTTCAAGAAAACCGATGA
Coding sequence (CDS)
ATGTCGCCTGATGAATTGATAGGAACAAGAACCACTCGGGTAAATGAAGGTAGGTATATTTCGAGCGGGTCTAAGTGGAAACGTGGAGGACAGGCTGCAGACAGTGGAGATGTATTCCGCACTGCGATTGAGTACAGAAATGAACAACTGAACCGCATTGCTGAATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACATCAAGAGGTTGTCCGACAGTTGGAGGTCATCCCTAAGCTAACATTGATGGATAGGTGTTGCTTAATGCATATACTTATGCGTAATGTCGATGACATGAAAGCTTTCCTTGACGTTCCAGACAATATGAAGTACTCGTACTGCAACATCATTCTTCAAGAAAACCGATGA
Protein sequence
MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQRQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQENR
Homology
BLAST of MELO3C031480 vs. NCBI nr
Match:
KAA0038320.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ
Sbjct: 78 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 137
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ
Sbjct: 138 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 197
Query: 121 ENR 124
ENR
Sbjct: 198 ENR 200
BLAST of MELO3C031480 vs. NCBI nr
Match:
KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPD+L+GTRT RV+E R +SSGSK KR G A DSGD+ RTAIEYRNEQLNRIAEWPVLQ
Sbjct: 153 MSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRIAEWPVLQ 212
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQ+ASQT QEVVRQLE IP+L LMDRC LMHILM NVDDMKAFLDVPDNMKYSY NIILQ
Sbjct: 213 RQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYSYYNIILQ 272
Query: 121 ENR 124
ENR
Sbjct: 273 ENR 275
BLAST of MELO3C031480 vs. NCBI nr
Match:
TYK10954.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 201.1 bits (510), Expect = 5.7e-48
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPD+L+GTRT RV+E R +SSGSK KR G A DSGD+ RTAIEYRNEQLNRIAEWPVLQ
Sbjct: 153 MSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRIAEWPVLQ 212
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQ+ASQT QEVVR+LE IP+L LMDRC LMHILM NVDDMKAFLDVPDNMKYSY NIILQ
Sbjct: 213 RQNASQTRQEVVRKLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYSYYNIILQ 272
Query: 121 ENR 124
ENR
Sbjct: 273 ENR 275
BLAST of MELO3C031480 vs. NCBI nr
Match:
KAA0067287.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10900.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 200.7 bits (509), Expect = 7.5e-48
Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPDEL+GTRTTRV+EGR++S+ S+ KRG QAA+S +V RTAIEY NEQLNRIAE PVLQ
Sbjct: 193 MSPDELMGTRTTRVSEGRFVSNRSERKRGPQAANSEEVIRTAIEYENEQLNRIAESPVLQ 252
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQDASQT QEVVRQLEVIP+LTLMDRC +M ILMRNVDDMKAFLD+PDNMKYSYCNIILQ
Sbjct: 253 RQDASQTRQEVVRQLEVIPELTLMDRCRVMRILMRNVDDMKAFLDIPDNMKYSYCNIILQ 312
Query: 121 EN 123
EN
Sbjct: 313 EN 314
BLAST of MELO3C031480 vs. NCBI nr
Match:
KAA0052025.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04535.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 98/123 (79.67%), Postives = 110/123 (89.43%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSP EL+GTRT RV+EGRY+SSG K KRGGQAADSG+V RTAI+Y NEQLNRIAEWPVLQ
Sbjct: 8 MSPYELMGTRTARVSEGRYVSSGFKRKRGGQAADSGNVLRTAIKYGNEQLNRIAEWPVLQ 67
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
QD +QT QEVVRQLE IP+LTLMDRC LM +LMRN+DD+KAFL+VPDNMKY YC+IILQ
Sbjct: 68 HQDINQTRQEVVRQLEAIPELTLMDRCRLMRMLMRNIDDIKAFLEVPDNMKYPYCSIILQ 127
Query: 121 ENR 124
ENR
Sbjct: 128 ENR 130
BLAST of MELO3C031480 vs. ExPASy TrEMBL
Match:
A0A5A7T4M9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001900 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ
Sbjct: 78 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 137
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ
Sbjct: 138 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 197
Query: 121 ENR 124
ENR
Sbjct: 198 ENR 200
BLAST of MELO3C031480 vs. ExPASy TrEMBL
Match:
A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 9.5e-49
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPD+L+GTRT RV+E R +SSGSK KR G A DSGD+ RTAIEYRNEQLNRIAEWPVLQ
Sbjct: 153 MSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRIAEWPVLQ 212
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQ+ASQT QEVVRQLE IP+L LMDRC LMHILM NVDDMKAFLDVPDNMKYSY NIILQ
Sbjct: 213 RQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYSYYNIILQ 272
Query: 121 ENR 124
ENR
Sbjct: 273 ENR 275
BLAST of MELO3C031480 vs. ExPASy TrEMBL
Match:
A0A5D3CIF5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00370 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPD+L+GTRT RV+E R +SSGSK KR G A DSGD+ RTAIEYRNEQLNRIAEWPVLQ
Sbjct: 153 MSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRIAEWPVLQ 212
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQ+ASQT QEVVR+LE IP+L LMDRC LMHILM NVDDMKAFLDVPDNMKYSY NIILQ
Sbjct: 213 RQNASQTRQEVVRKLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYSYYNIILQ 272
Query: 121 ENR 124
ENR
Sbjct: 273 ENR 275
BLAST of MELO3C031480 vs. ExPASy TrEMBL
Match:
A0A5A7VJD7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00750 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 3.6e-48
Identity = 101/122 (82.79%), Postives = 112/122 (91.80%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSPDEL+GTRTTRV+EGR++S+ S+ KRG QAA+S +V RTAIEY NEQLNRIAE PVLQ
Sbjct: 193 MSPDELMGTRTTRVSEGRFVSNRSERKRGPQAANSEEVIRTAIEYENEQLNRIAESPVLQ 252
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
RQDASQT QEVVRQLEVIP+LTLMDRC +M ILMRNVDDMKAFLD+PDNMKYSYCNIILQ
Sbjct: 253 RQDASQTRQEVVRQLEVIPELTLMDRCRVMRILMRNVDDMKAFLDIPDNMKYSYCNIILQ 312
Query: 121 EN 123
EN
Sbjct: 313 EN 314
BLAST of MELO3C031480 vs. ExPASy TrEMBL
Match:
A0A5D3BZD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001570 PE=4 SV=1)
HSP 1 Score: 199.9 bits (507), Expect = 6.2e-48
Identity = 98/123 (79.67%), Postives = 110/123 (89.43%), Query Frame = 0
Query: 1 MSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRIAEWPVLQ 60
MSP EL+GTRT RV+EGRY+SSG K KRGGQAADSG+V RTAI+Y NEQLNRIAEWPVLQ
Sbjct: 8 MSPYELMGTRTARVSEGRYVSSGFKRKRGGQAADSGNVLRTAIKYGNEQLNRIAEWPVLQ 67
Query: 61 RQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYSYCNIILQ 120
QD +QT QEVVRQLE IP+LTLMDRC LM +LMRN+DD+KAFL+VPDNMKY YC+IILQ
Sbjct: 68 HQDINQTRQEVVRQLEAIPELTLMDRCRLMRMLMRNIDDIKAFLEVPDNMKYPYCSIILQ 127
Query: 121 ENR 124
ENR
Sbjct: 128 ENR 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0038320.1 | 2.2e-63 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0063726.1 | 2.0e-48 | 82.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK10954.1 | 5.7e-48 | 82.11 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0067287.1 | 7.5e-48 | 82.79 | retrotransposon protein [Cucumis melo var. makuwa] >TYK10900.1 retrotransposon p... | [more] |
KAA0052025.1 | 1.3e-47 | 79.67 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04535.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T4M9 | 1.0e-63 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VBC5 | 9.5e-49 | 82.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CIF5 | 2.8e-48 | 82.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VJD7 | 3.6e-48 | 82.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BZD6 | 6.2e-48 | 79.67 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |