MELO3C031472 (gene) Melon (DHL92) v4

Overview
NameMELO3C031472
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAP-3 complex subunit sigma-like
Locationchr05: 20320555 .. 20324013 (-)
RNA-Seq ExpressionMELO3C031472
SyntenyMELO3C031472
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGACGCTCCACCCACATAGGTTCTCCGTGACTGTAATGTCCAGGAAGGCCGATATGAAGAAAGAAGTAGGTCTTTATGTTTAACCCCCATCAACTGTTTGTTGTTTGTTCTGCTTTTGGGTTCTCTTTTGTTTTACTGTGTAATTGGATTCGCTCTGTTGTTGGATTGATTTGGGAATGTGGATTTTGCAATGTGGTGATTTTTGTGTAAGGGGCAGGTTAATATGTTTCTATTTGATCTTTTTTGTTGACGTCATGAGGATATGTTCATGTAGTATCCTCATCATACTAACCGAACCAAGATTTATCAAGTGGGCATACCTTATCAATGTTTTGTTTAATGTGTGCATTAACAACTTTGACTAAATTGAAGTGTAATGTACATGAAACTTCTTAAATTTGAACTTAATGACACTAATACTTTTCCTTCAAAATATAACATGTATACTGGAACGTCTGAGCACATGTATATTTTGGTTCCTCATGTTGGTGTTGTGAACTCTGAAACTTTTTATTTATTACTTTTGCCAGATTGAAGTTCTTAATCAGTGAGCATTTTGGTTTGCACACAAGTTGTAAAATGCCTTATAAATTTGATTCACAAGCACGGTGGCTGGATTGACAATGATGGATCCATCTTCTAGGCTTGTGATACAATCTTGAATGTGCTTCTGAAGGTACTCATCTAGTAAACTACTGTAGAACGAAATTTTGTTTATATTGTTTCTTTAAGTTCTTGATTGGTTATCATTTGATTTTCCATTTTTGGTAAATTTTGGTCTCCACAATGTAACAAGTTTTTTGTTTATGCTTGCAAGATGTTTGATCAAATGTCTCCAAAATCAAAGGTTAATTCATAAGGTGTTTTTGTTCTAATTTTCTGTGTTTTTTGAATGGGAGCTAAACTTCTCCTAGTGCAAATGACCAATGTGAGTGATTTTTCAGCACAATTAAACTTGTACCATTGGTTTAGGTAAATTTTGGTCTCCACAATGTAACTAGTTTTTTATGGAGTAAATTATTGCTAATTCATTGGTATTATGCATAAATTATTGCTAATTTATTTGGTTTGAACTTTGATGTTTCTTTCCTTCCAAGTAATGGAAATAAAAAGGGACAGCTTCAGAATGATTCTAACTGGGTAGATGGTGACAGCTTCAGTGTGTAATGTTCCCTTCCTTTCACTTGAGATACAAATCATTTAGCATATTGAAGAATAGAAAAAAGGAGGAAAATGTGGTTATGTTATAAATCTCAAATTTTGGCAGTTTTTGAAAACATCGGTTGAAACTAGATCATAAACCAAAAAGTTTAAAGATGTAGTGGGTGTTCATAGGCCTAATTTTCAAAGGTAACTAAGTGAGGGCTCAAGAAATGTTCCTTTATGGTTTTTTCAATAGGGAGTCAAAAGAAAAAAAACGAATCCTTAATCGGCTTGTGTTTTATAACTTGAAAGACCAGGGATGGGAGCCACATATTCTCTTTTGGGAATCATACAACTGAGATTTAGACAATTCTAATTCTGAAAGTAGTATCTCTCTGTATATGAGGTATAAAATAAAAATTCCAATGGCTTTTGTGTGCATGTTCATTATGTTTTCAGGGCTTCTCTTGTTCGTATGCCCTCTACATGTCTGGATGACCTAGCCTTTTCTAGTGTTCTAATTGCATCCGATCTTTTCTCCTATTATCAATAATGACTCTGGCTGCTTGTAATCTGAGATCTGTTGGTGCATATCAGATATTTTCCTCGGGATGTTGTTGCACGCAGTTTTGCCAACTACCTACTTGTTGGTCAGTATTTCTTTCTTTTATATTTATTTTTGTGTACTATGTTTGTAGTTTTATTATTTGAGGTAGTAGTAAAGGGAAGTAATATTGCTCAGATATATCTTTCGAAGTAATAATATGCTTATTCATCTTGGAAGTGGTAAAGGGAATAAATCTTTGATTTTACTGAATTATTTCTTCTGTAGGATTCTGCGTCATTGTTGGGTCAGTTTGATTTTACTGAATTGTTTCTTCTCTTTGAATCCTCTGTTATTTGTTCTTCTGTGCCATTATTGGGTAAGTTTCAACCTTCAATTCTTAATTATATGTTTTGTATTTTCAGTTCCTTTGATGTTTATACTCTGTTGCTTGGGATGTTTCTTTAGTTTGTTTTTCTTTTGATGTTTAATTTGGACCTTAATAAATTAGTACGAACTATGTTGTAGAATTGTTCTTTACTTTAGTTGATGATTGTCTAATGCAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCACGAATGTTATACAAAGCATGGAAAAAAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGCGGAGGTAATTTAGATTTTATTTGTCGTTGTCTTGGATTAAGGACTATTTTTATGGTCAATTTCTGACAGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAACGATCAGCTATGTTGATGATTCTGGTGGCCTAGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCAGCTTATTTTTAATAGTTGTTAGTTGATTTCTCTGACTAAATAAGTTTTGAACATACTTTGTTGTTGTGATGTTATCTTCTTGTAGATTGGCTCTGCTGTTGGTGGTACTTATTTTAGCTCATGAATTGAAGATAGAGGATGCGAATGCAAGTTTATTTGAAGCCAAGTTTCATCCAAAGTTATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTATGATTTTTGGAACAACATAGTTGGAAAGGTTTTGTAATTTTGGAATTATCATATTAGGTTGGGTAGATAGAAGTAATGTTTTTTATATGACAATATCGAACAAATATGTAAAGTTTTCGAAATGTTGATACATATACGGTAAAATGTTAATATATGTTAAAGTTTTGGAATTGTCCTCCTGCATATTTATGCTCAATTTTTTAAACTATTTTTTATGAATATCGTCGTTTATATATATTTATGAAACTGTTGTTGGACCACTATACAGCACAATGAGAGCAAAATACAGGATCAAAAATTTAATTTAATAACAATTTTAAAAAAATTCGGAACATGTTTGACAAGTTTAAAATGTCATAAAAAAGTACATTCTTGACATTTTTAAAATGTCATAAAATAGTATATCCTTACGGTTTTTCAATGTCATAAACAATCAATTTTTTTACGGTTATTAAATGTCATGAATACTCGTATTCTTGACGGTTTTAAATTTTCATGAATACTCATACTCTTGACGATTTTAAACTGTCAATGTTCACTATTCTTGACGTTTTTAGCAACCGTCAAGAAATTCGACTTTCTCGACACTGGCTTCAACGACGATTTTAAAACCGTCAAGGATAATAATTCTTGA

mRNA sequence

ATGCAGACGCTCCACCCACATAGGTTCTCCGTGACTGTAATGTCCAGGAAGGCCGATATGAAGAAAGAAGTAGTTTTATTATTTGAGGTAGTAGTAAAGGGAAGTAATATTGCTCAGTTTTGTATTTTCAGTTCCTTTGATGTTTATACTCTGTTGCTTGGGATGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCACGAATGTTATACAAAGCATGGAAAAAAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGCGGAGGACTATTTTTATGGTCAATTTCTGACAGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAACGATCAGCTATGTTGATGATTCTGGTGGCCTAGAAGCAACTCTAGGCATTAAATTCATTATGATTGGCTCTGCTGTTGGTGCAACCGTCAAGAAATTCGACTTTCTCGACACTGGCTTCAACGACGATTTTAAAACCGTCAAGGATAATAATTCTTGA

Coding sequence (CDS)

ATGCACGAATGTTATACAAAGCATGGAAAAAAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGCGGAGGACTATTTTTATGGTCAATTTCTGACAGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAACGATCAGCTATGTTGATGATTCTGGTGGCCTAGAAGCAACTCTAGGCATTAAATTCATTATGATTGGCTCTGCTGTTGGTGCAACCGTCAAGAAATTCGACTTTCTCGACACTGGCTTCAACGACGATTTTAAAACCGTCAAGGATAATAATTCTTGA

Protein sequence

MHECYTKHGKKVESCLPYANINNVAEDYFYGQFLTGTVWSIKKQCKVLTISYVDDSGGLEATLGIKFIMIGSAVGATVKKFDFLDTGFNDDFKTVKDNNS
Homology
[Close]
BLAST of MELO3C031472 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-17
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 3   ECYTKHGKKVESCLPY-ANINNVAEDYFYGQFLTGTVWSIKKQCKVLTISYVDDSGGLEA 62
           +C   + K+VESC P  ANINNVA      +FLTGTVWSIKKQCKVL ISYVDDSGGLEA
Sbjct: 113 QCMNAYTKEVESCFPSDANINNVA------KFLTGTVWSIKKQCKVLMISYVDDSGGLEA 172

Query: 63  TLGIKFIMI 71
           TLGIKFIM+
Sbjct: 173 TLGIKFIMV 175

[Close]
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.6e-17
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 3   ECYTKHGKKVESCLPY-ANINNVAEDYFYGQFLTGTVWSIKKQCKVLTISYVDDSGGLEA 62
           +C   + K+VESC P  ANINNVA      +FLTGTVWSIKKQCKVL ISYVDDSGGLEA
Sbjct: 113 QCMNAYTKEVESCFPSDANINNVA------KFLTGTVWSIKKQCKVLMISYVDDSGGLEA 172

Query: 63  TLGIKFIMI 71
           TLGIKFIM+
Sbjct: 173 TLGIKFIMV 175

[Close]
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match: A0A5A7T743 (Neurochondrin isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold68G00200 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 1   MHECYTKHGKKVESCLP-YANINNVAE 27
           MHECYTKHGK+VESCLP YANINNV +
Sbjct: 107 MHECYTKHGKEVESCLPSYANINNVVK 133

[Close]
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match: A0A5D3C3W9 (Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00080 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 1   MHECYTKHGKKVESCLP-YANINNVAE 27
           MHECYTKHGK+VESCLP YANINNV +
Sbjct: 155 MHECYTKHGKEVESCLPSYANINNVVK 181

[Close]
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match: A0A1S3CQA2 (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 1   MHECYTKHGKKVESCLP-YANINNVAE 27
           MHECYTKHGK+VESCLP YANINNV +
Sbjct: 75  MHECYTKHGKEVESCLPSYANINNVVK 101

The following BLAST results are available for this feature:
BLAST of MELO3C031472 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.19.4e-1772.46PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
BLAST of MELO3C031472 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CL754.6e-1772.46AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=... [more]
A0A5A7T7437.6e-0485.19Neurochondrin isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3C3W97.6e-0485.19Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CQA27.6e-0485.19uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO3C031472 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031472.1MELO3C031472.1mRNA