MELO3C031228.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031228.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPre-mRNA-processing factor 39 isoform X3
Locationchr05: 16557996 .. 16558262 (+)
RNA-Seq ExpressionMELO3C031228.jh1
SyntenyMELO3C031228.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAATGTACACAAGGTAGTCGTAGGCAAGAGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACAGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGAGTTTTCTAAAACAAGGTAGTTGTTTTTTGTTTAGGTTTGTTCTCAAAG

mRNA sequence

AAGGAATGTACACAAGGTAGTCGTAGGCAAGAGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACAGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGAGTTTTCTAAAACAAGGTAGTTGTTTTTTGTTTAGGTTTGTTCTCAAAG

Coding sequence (CDS)

ATGAAGAAGATGAAGACGAGCACAGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGA

Protein sequence

MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY
Homology
BLAST of MELO3C031228.jh1 vs. NCBI nr
Match: TYK10342.1 (uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.72e-24
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
          MKKMKTSTVTPYVGH VRT+LQMNFGF VIS+RNGSM NLLYEEMLQFI+FL MY
Sbjct: 14 MKKMKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C031228.jh1 vs. NCBI nr
Match: KAA0058974.1 (hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK11007.1 hypothetical protein E5676_scaffold874G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.98e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLL 41
          MKKMKTSTVTPYVGHAVRTMLQMNFGF VISVRNGSM NLL
Sbjct: 24 MKKMKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

BLAST of MELO3C031228.jh1 vs. NCBI nr
Match: XP_016903219.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA0039695.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa] >TYJ96187.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 5.82e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C031228.jh1 vs. NCBI nr
Match: XP_016903218.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 6.62e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO3C031228.jh1 vs. NCBI nr
Match: AFK40571.1 (unknown [Medicago truncatula])

HSP 1 Score: 45.8 bits (107), Expect = 9.37e-05
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKN 39
          M++ KTS V P+VG AV T  +MNFG  VI VR G+M+N
Sbjct: 16 MRRRKTSIVKPFVGAAVETTTRMNFGLAVIFVRGGTMEN 54

BLAST of MELO3C031228.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00170 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.32e-24
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
          MKKMKTSTVTPYVGH VRT+LQMNFGF VIS+RNGSM NLLYEEMLQFI+FL MY
Sbjct: 14 MKKMKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C031228.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UV27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.90e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLL 41
          MKKMKTSTVTPYVGHAVRTMLQMNFGF VISVRNGSM NLL
Sbjct: 24 MKKMKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

BLAST of MELO3C031228.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BAP5 (Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00140 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.82e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C031228.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4R6 (uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.82e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C031228.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4Q8 (uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.21e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 55
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10342.12.72e-2487.27uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa][more]
KAA0058974.15.98e-1695.12hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK1100... [more]
XP_016903219.15.82e-1278.57PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA00... [more]
XP_016903218.16.62e-1278.57PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo][more]
AFK40571.19.37e-0556.41unknown [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG91.32e-2487.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UV272.90e-1695.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAP52.82e-1278.57Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E4R62.82e-1278.57uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4Q83.21e-1278.57uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031228.jh1.t1MELO3C031228.jh1.t1mRNA