MELO3C031221 (gene) Melon (DHL92) v4

Overview
NameMELO3C031221
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUbiquitin-NEDD8-like protein RUB2
Locationchr05: 5328364 .. 5330436 (-)
RNA-Seq ExpressionMELO3C031221
SyntenyMELO3C031221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTGTTTTACAGAACTGAAACATCTTTTTTATATGGGAACTCCTAGTGCAGCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGGTATCGAGAATCTCTATCTGACATAGTCAATGTAAAAATTTTCGACTAAGAGTTCTTGACGCGTGCATGAGATGTCGGGATAAGGTAATTATTTTCAACGCCTTACCTCCAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGTCAGAAAAAGTTAATAATAAAATAATATTTTTGCCTTTGCCCGATGTATGAAAAGCGGCGTCGAGGGAAGGTGTATGTCCCGACGTTGTTTCCTTCGACGCATTTCTTTGCGTCGGAAAAATCTCGATTTCTTGTAGTGATTTTTTGTATTAAAGAAAAGCCATTTGTGATGAACATGAACTATCTCATTGTGTTAATAATTTGAAGATCTTATTTATGGATCTTCAGTTGGCTAAAAAAGAAATAGACCCTTAAAGCCTCATGTCATATTGAAAACTTAAGTCTTCTTTTTCTTTTTTGTGTGGTAGGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGTCAGTTGGTAAGAAATTAATATACTACTGTTGTAACTAGTGTCTTTTCTCCTTTCTCCTTAGAGAAGTAGTATTTAAAATCCTTTAATCTTTTTTTTTTTTATATGACACCAAGAACTTAACGTTTATTATGCTTTCAGGAACATTAATCTATCTTTAAAATTGAGACTAGTCTTTAGTTTTGCATTTTGGTGGCTACAAAGTTTCTTTTCAATCATGTTAGGTTTTGTTTTCTTACTAGGTTTTGTAAGAATCCATTAGAGTAATGAAATCATATTGGAGCAACTGACTGATGATTGTACTATTTCCTGATTTTTTTGTCATTGTTGTGCAAGGGTCAAGCTAATCTTTCAGTTCCAATTTTATTGTATGTTGCGGACCATAGTAGATTGGAATAGAACATTTGAAGTGTGAAAGGAAATTCCAGAAAATGATTATACCTTTTAGTAATTTTGTTATCTGTGGCTGTTGTTTCTTTCCTAATTTTGGTCTTTCTATTTTTTAAACTCCCTTGCATTGTTCCACGTGCATCCATAAACTATTATTCATTCAGTAATTGCATCTGAAAAATGCATCATTCATTCAGTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGGTTTGTGTTTGACTCCTTTAATTACTTAATCTACAATAACTATATTTTCTATGGCCTTTTAAATTCTTAGGCTTTTTAGAACTGTGAACTGGCCATGTATCCACCTAAAGCTGCACCTTTTCTCCATTACAAGTTGGTTTATGTAACTGAAATAATGTTTAATTGTCATTTATAATTGATAAATGGAAAATTTTGTAATTTTGTAACATATTTGGTTTTGTACAATAATCCTTCGTTTTACTCAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGAAACTAGAATTGATTTATACGCCTTTTTTTTAGGGTTGGTAGCAAAATTTTGTTTGAAATGTACTTATTTAAATAGCTTGTTGGTACCAAAACATGTATGTTTATTCTATTATTGTAAACTCTTTACCAAGAATTGTACAAATATTACAAAGTGTATATTAACGTGTATATATTATAGCGTTGATTGTTTATTTCTA

mRNA sequence

ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGGTCAAGCTAATCTTTCAGTTCCAATTTTATTTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGAAACTAGAATTGATTTATACGCCTTTTTTTTAGGGTTGGTAGCAAAATTTTGTTTGAAATGTACTTATTTAAATAGCTTGTTGGTACCAAAACATGTATGTTTATTCTATTATTGTAAACTCTTTACCAAGAATTGTACAAATATTACAAAGTGTATATTAACGTGTATATATTATAGCGTTGATTGTTTATTTCTA

Coding sequence (CDS)

ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGGTCAAGCTAATCTTTCAGTTCCAATTTTATTTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGA

Protein sequence

MTARATVARVDIFSSLRFVGQAFLFLFLFCVDSVTKISGAPLTPNTIPNESLMASEALLTPNVILDESLVTLEAILTPNAMQEMLKMWSCFPTTLSRRSGCKKLANDDSYTSYPIPNTSSEGQANLSVPILFNSLPLVLVELADYAYEKSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFFGSPSRPQLVALVAQVR
Homology
[Close]
BLAST of MELO3C031221 vs. NCBI nr
Match: PWZ13070.1 (Ubiquitin-NEDD8-like protein RUB2, partial [Zea mays])

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFF 187
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ   AD++
Sbjct: 73  KEIEIDIEPTDSIDRIKERVEEKEGIPPVQQRYHADYY 110

[Close]
BLAST of MELO3C031221 vs. NCBI nr
Match: RWR81895.1 (ubiquitin family protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSC 182
           K +E+DIEP D I  IKERVEEKEGIPPVQQ C
Sbjct: 87  KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRC 119

[Close]
BLAST of MELO3C031221 vs. NCBI nr
Match: XP_020082520.1 (ubiquitin isoform X3 [Ananas comosus])

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-04
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ---SCAADFFGSPSRPQL 195
           K +E+DIEP D I  IKERVEEKEGIPPVQQ   + +   F  P+RP L
Sbjct: 87  KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRPATTSCPSFLHPARPVL 135

[Close]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match: Q9SHE7 (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match: P0C030 (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match: Q8RUC6 (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match: P0C031 (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match: P0C073 (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ +KERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRVKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match: A0A3L6DWR2 (Ubiquitin-NEDD8-like protein RUB2 (Fragment) OS=Zea mays OX=4577 GN=RUB2_0 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFF 187
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ   AD++
Sbjct: 73  KEIEIDIEPTDSIDRIKERVEEKEGIPPVQQRYHADYY 110

[Close]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match: A0A6P5EME3 (ubiquitin isoform X3 OS=Ananas comosus OX=4615 GN=LOC109706119 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ---SCAADFFGSPSRPQL 195
           K +E+DIEP D I  IKERVEEKEGIPPVQQ   + +   F  P+RP L
Sbjct: 87  KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRPATTSCPSFLHPARPVL 135

[Close]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match: A0A443NTP6 (Ubiquitin family protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01059900 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSC 182
           K +E+DIEP D I  IKERVEEKEGIPPVQQ C
Sbjct: 87  KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRC 119

[Close]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match: A0A6P6B9V8 (ubiquitin-NEDD8-like protein RUB2 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111316082 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 77  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 107

[Close]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match: A0A2P6REJ7 (Putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0483741 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D IN IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDTINRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221 vs. TAIR 10
Match: AT1G31340.1 (related to ubiquitin 1 )

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. TAIR 10
Match: AT2G35635.1 (ubiquitin 7 )

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221 vs. TAIR 10
Match: AT1G11980.1 (ubiquitin-related protein 3 )

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-05
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 148 EKSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           EK ++++IE  D I  IKER+EEKEGIPPV Q
Sbjct: 10  EKQIDIEIELTDTIERIKERIEEKEGIPPVHQ 41

The following BLAST results are available for this feature:
BLAST of MELO3C031221 vs. NCBI nr
Match NameE-valueIdentityDescription
PWZ13070.12.2e-0468.42Ubiquitin-NEDD8-like protein RUB2, partial [Zea mays][more]
RWR81895.16.4e-0475.76ubiquitin family protein [Cinnamomum micranthum f. kanehirae][more]
XP_020082520.16.4e-0459.18ubiquitin isoform X3 [Ananas comosus][more]
BLAST of MELO3C031221 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SHE77.1e-0677.42Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 S... [more]
P0C0307.1e-0677.42Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
Q8RUC67.1e-0677.42Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 S... [more]
P0C0317.1e-0677.42Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
P0C0739.2e-0674.19Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE... [more]
BLAST of MELO3C031221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3L6DWR21.1e-0468.42Ubiquitin-NEDD8-like protein RUB2 (Fragment) OS=Zea mays OX=4577 GN=RUB2_0 PE=4 ... [more]
A0A6P5EME33.1e-0459.18ubiquitin isoform X3 OS=Ananas comosus OX=4615 GN=LOC109706119 PE=4 SV=1[more]
A0A443NTP63.1e-0475.76Ubiquitin family protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN... [more]
A0A6P6B9V86.9e-0480.65ubiquitin-NEDD8-like protein RUB2 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC... [more]
A0A2P6REJ76.9e-0480.65Putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin ... [more]
BLAST of MELO3C031221 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G31340.15.0e-0777.42related to ubiquitin 1 [more]
AT2G35635.15.0e-0777.42ubiquitin 7 [more]
AT1G11980.18.0e-0562.50ubiquitin-related protein 3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 141..184
e-value: 6.8E-6
score: 28.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031221.1MELO3C031221.1mRNA