MELO3C031112.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031112.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	glial fibrillary acidic protein-like
Location	chr05: 7449761 .. 7450485 (+)
RNA-Seq Expression	MELO3C031112.jh1
Synteny	MELO3C031112.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAATAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGCAAAAACAGATTTTTGCAAAAAGTCGTTAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAATGTCGATAGATTTCATGATATGGAAGGACGAGTACAAGACATTGAGGCATAAGTAAGATGATGTTATAGGTCGGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCATATCAATTCTCA

mRNA sequence

ATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGCAAAAACAGATTTTTGCAAAAAGTCGTTAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAATGTCGATAGATTTCATGATATGGAAGGACGAGTACAAGACATTGAGGCATAAGTAAGATGATGTTATAGGTCGGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCATATCAATTCTCA

Coding sequence (CDS)

ATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGCAAAAACAGATTTTTGCAAAAAGTCGTTAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAATGTCGATAG

Protein sequence

MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIEKYQECR

Homology

[Close]

BLAST of MELO3C031112.jh1 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 265 bits (677), Expect = 3.10e-87
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHD+EKELKRLREMNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 1   MSESLVPNIELKKYHDQEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAK 60

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKK---------------TAI 120
           RK LELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEA+K               TA+
Sbjct: 61  RKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAM 120

Query: 121 EIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIEKYQE 165
            IEVLQHSI+EYKSQLIEA+SKN FLQK VN+SESQLLIC KAR+V+TDDYAQL+EKYQE
Sbjct: 121 GIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQE 180

[Close]

BLAST of MELO3C031112.jh1 vs. NCBI nr
Match: TYK12200.1 (uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (611), Expect = 6.22e-73
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 27  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 86
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 87  LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICH 146
           LLRNIA+LHEE+EAKKTAIEIEVLQHSIKEYKSQ IEAKSKNRFLQKVVN+SESQLLIC 
Sbjct: 61  LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKSQFIEAKSKNRFLQKVVNSSESQLLICR 120

Query: 147 KARKVVTDDYAQLIEKYQE 165
           KAR+VVTDDYAQLIEKYQE
Sbjct: 121 KAREVVTDDYAQLIEKYQE 139

[Close]

BLAST of MELO3C031112.jh1 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (611), Expect = 8.76e-73
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 27  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 86
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 87  LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICH 146
           LLRNIA+LHEE+EAKKTAIEIEVLQHSIKEYKSQ IEAKSKNRFLQKVVN+SESQLLIC 
Sbjct: 61  LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKSQFIEAKSKNRFLQKVVNSSESQLLICR 120

Query: 147 KARKVVTDDYAQLIEKYQE 165
           KAR+VVTDDYAQLIEKYQE
Sbjct: 121 KAREVVTDDYAQLIEKYQE 139

[Close]

BLAST of MELO3C031112.jh1 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (568), Expect = 1.47e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 259 MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 318

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 120
           RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ
Sbjct: 319 RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 378

Query: 121 LIEAK 125
           LIEAK
Sbjct: 379 LIEAK 383

[Close]

BLAST of MELO3C031112.jh1 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (568), Expect = 4.93e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 323 MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 382

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 120
           RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ
Sbjct: 383 RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 442

Query: 121 LIEAK 125
           LIEAK
Sbjct: 443 LIEAK 447

[Close]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 1.50e-87
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHD+EKELKRLREMNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 1   MSESLVPNIELKKYHDQEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAK 60

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKK---------------TAI 120
           RK LELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEA+K               TA+
Sbjct: 61  RKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAM 120

Query: 121 EIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIEKYQE 165
            IEVLQHSI+EYKSQLIEA+SKN FLQK VN+SESQLLIC KAR+V+TDDYAQL+EKYQE
Sbjct: 121 GIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQE 180

[Close]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CLA9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001510 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 3.01e-73
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 27  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 86
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 87  LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICH 146
           LLRNIA+LHEE+EAKKTAIEIEVLQHSIKEYKSQ IEAKSKNRFLQKVVN+SESQLLIC 
Sbjct: 61  LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKSQFIEAKSKNRFLQKVVNSSESQLLICR 120

Query: 147 KARKVVTDDYAQLIEKYQE 165
           KAR+VVTDDYAQLIEKYQE
Sbjct: 121 KAREVVTDDYAQLIEKYQE 139

[Close]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 4.24e-73
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 27  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 86
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 87  LLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICH 146
           LLRNIA+LHEE+EAKKTAIEIEVLQHSIKEYKSQ IEAKSKNRFLQKVVN+SESQLLIC 
Sbjct: 61  LLRNIADLHEEMEAKKTAIEIEVLQHSIKEYKSQFIEAKSKNRFLQKVVNSSESQLLICR 120

Query: 147 KARKVVTDDYAQLIEKYQE 165
           KAR+VVTDDYAQLIEKYQE
Sbjct: 121 KAREVVTDDYAQLIEKYQE 139

[Close]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 7.12e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 259 MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 318

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 120
           RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ
Sbjct: 319 RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 378

Query: 121 LIEAK 125
           LIEAK
Sbjct: 379 LIEAK 383

[Close]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 2.39e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 60
           MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK
Sbjct: 323 MSESLVPNIELKKYHDKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAK 382

Query: 61  RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 120
           RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ
Sbjct: 383 RKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQ 442

Query: 121 LIEAK 125
           LIEAK
Sbjct: 443 LIEAK 447

The following BLAST results are available for this feature:

BLAST of MELO3C031112.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	3.10e-87	83.33	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]
TYK12200.1	6.22e-73	94.24	uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa]	[more]
KAA0049672.1	8.76e-73	94.24	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]
KAA0032013.1	1.47e-66	100.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
TYK16834.1	4.93e-66	100.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031112.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLQ1	1.50e-87	83.33	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]
A0A5D3CLA9	3.01e-73	94.24	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U1L8	4.24e-73	94.24	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SNY0	7.12e-67	100.00	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D0S2	2.39e-66	100.00	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C031112.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..134
None	No IPR available	COILS	Coil	Coil	coord: 35..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031112.jh1.t1	MELO3C031112.jh1.t1	mRNA