MELO3C031110 (gene) Melon (DHL92) v4

Overview
NameMELO3C031110
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlial fibrillary acidic protein-like
Locationchr11: 10521852 .. 10522100 (-)
RNA-Seq ExpressionMELO3C031110
SyntenyMELO3C031110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

mRNA sequence

ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

Coding sequence (CDS)

ATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGACATTTTGGGTGCTACCATTAG

Protein sequence

MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDTNRELSHFLGIIGQYLGHFGCYH
Homology
[Close]
BLAST of MELO3C031110 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C031110 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 9.1e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQF +QARTLRQGVIPTRDT
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

[Close]
BLAST of MELO3C031110 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG F CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

[Close]
BLAST of MELO3C031110 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQGVIPTRD 
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           + ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C031110 vs. NCBI nr
Match: KAA0034829.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 5.9e-33
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA MADQFSMQARTLRQGVIPTRDT
Sbjct: 278 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAGMADQFSMQARTLRQGVIPTRDT 337

Query: 61  NRELSHFLGIIGQYL 76
           NRELSHFLGIIGQYL
Sbjct: 338 NRELSHFLGIIGQYL 352

[Close]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.9e-35
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQF +QARTLRQGVIPTRDT
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG FGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

[Close]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.5e-34
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA +ADQFS+QARTLRQGVIPTRDT
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           ++ELSHFLGIIGQ LG F CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

[Close]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQGVIPTRD 
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  NRELSHFLGIIGQYLGHFGCYH 83
           + ELSHFLGIIGQ LG FGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

[Close]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match: A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDT 60
           MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMA MADQFSMQARTLRQGVIPTRDT
Sbjct: 278 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMAGMADQFSMQARTLRQGVIPTRDT 337

Query: 61  NRELSHFLGIIGQYL 76
           NRELSHFLGIIGQYL
Sbjct: 338 NRELSHFLGIIGQYL 352

The following BLAST results are available for this feature:
BLAST of MELO3C031110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065294.11.8e-3491.46glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK27025.19.1e-3490.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0046606.11.6e-3390.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025321.13.5e-3390.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0034829.15.9e-3398.67glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C031110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDD98.9e-3591.46Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUN14.4e-3490.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TXA17.5e-3490.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SM491.7e-3390.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7T0F32.9e-3398.67Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C031110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031110.1MELO3C031110.1mRNA