MELO3C030992 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030992
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr04: 28922038 .. 28924722 (+)
RNA-Seq Expression	MELO3C030992
Synteny	MELO3C030992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTATTGTCCCATCTCATTTCATAAATTACTTTCATCCTTAAAATTTTTTCTCATCAATCGTTTTAATCTCTCAATGAACATGTCAACAATTTATATCAACAATCTTCTAGTTGGGTTCTCATTCCAAGTAATGGAAAAATGGGAGAATTTCAAAAGCATGAGAATGAGAATCTTCAAATCTCAAAGATGATTTTATTAAATGAAAAGGTAAGGAATTCGGTTGATTAATAATTTTTCTAAAATTATCTTGAATTTAACTTTCATCAATTGGTTTCGCTTACTCTGGGAATGATTAGTGTTATCAGTTGGGGTGTAGCTGAGATACCCCAAATCATTACAAACTGCAGGGAAAAATCTTCTGATGGCCTATCTCTTGCCTTCTTGCTAACATGGATACTGGGGTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTGTCCTCTTTGATTTTTGGCTTCATTTGCTAGGCCTGGTACTTATACACTTCAGTAATATGACTTATTTAAATGAATGGATAGTGTACTTGGAAAGACTTCCAGTTTGAATAACATCATTTATCTTACTGCATCTTCATTGAAATCTTGTTTAATATTGGCATGGTTGGCTCTTACCAATTACAAGTTACAGTTAGTGTACTTTAATAGTTCAGAACAATGATTTTTGTTAATCTTGTGTTAGACCTCCTATTAAGTTCCATTATAGCCGGAGAAATAAAACTCACCTGTAATACATGTGAGTTGGAAAGTCGGGTTAACAAGAAGTATAAATAACATTTTGGTTAGGCGGGAAAGTTAGTTAGAGTTTTTGTATGAAGTTAGATTGTTGATTCTTGAGAGGAGAACAACAAGTGTCTATAAATGAGAATCGATATTCTATAAATTCTTCTTTGTAACTTTGATTTTCATATTGAAAGAAAGAGGAAATTCATACCGAGGATAGAGTTCTATCAATTTGGTACTAGAGAAGCGATCCTGGAGTAAATATGGTTCAAACACGTATCGAAAAAAGGTTGGAGTTAATCGATCAGAAAATCGCCAGAATGAAGAAAGAGCTTAGTAAAATGCCCGTGATCGAAACAAGTTTGAGCGATATCGTGAAGAACCTCGAAATAATAGCACTCAAAGAAGCAGCAGTAAATACTTTTATATGATGTACTTTGAATTTAATTGAATTGAGTATAATAATAATATATTGAATAACAATACGATTCCTTGAATTAAATTTAATAATTATAAAGAAGAATCCTCTTTTGACCTAATTGCAACCCCCGCACATTAAAAATACCAATACCATATCGACAGCAACTCCCATATCGAAAATTTAACATACATATCTCACTATTTAAACAGAAAGATGGCCTTCTAAGAGCACGACCTTACTTGAACAGGATCTGTTCTATAGGTTGTACATCTGTGTCCTTGAGTTCTAAGGAGACAAGAACCAAAACAAAGTCTGGTGGATGATCTACTGCCTTGAGGCTAGAGCGTGATTAACGGTTCAACAGGCCTTGGTCTGGCGGCTATAGAGGATCGTTCTTGGCAGGCTTACCACCTGCTGAGATGGCCCCAAGGCGGTCTGACAGACTTCAATTAAATTTTTTGTTAGCCTCTTTCAATTTATTATGAGCCAGCCTTTGAGCTAATTTTTAAGGTGTTTTTTTGTTTTGGCTTTTGTGTTTCTTGTGGTTTGAATTTCTGTTATTGGTATATGGTGTTTTTGGTGTGAAGAGATTTGAAATATGGGAGACTTAGAGGGTGGGTATTTGGTTTATGCTCACAAGTTGTTTGATGTATGTCTAGAAAATTTGAGGTTAATTCTTAAAAGATGTTTTCTCTCGTTTTTTGAGTTCCTTGAATGGGGTTTGGATTTCTGCTGCTACCATATGTTGTTTGTGTGAAGAGATATGAAAGATGGGGTATTTTATTTAGATGGGATATTTGGTTTTTGCTCCCAAAGTGTTTGATGAAAAGTCTCCAAAACAAATTCTTGAGTTGCTTTTGTTCTTATAGTAATAAAAAATAGTAGGAACCATTCGCATCCCATAACATTACAACAGCCATATCCATATCCGTGTATGAATTCCCATTAACTCCATCTTTCTCCTCACTCCCTCCATTCCTGCAAATCCATATCTCACCTCGAGCAAATCCATGGCATAGGTTTTTGCAATTATTAATTTTATAATTTTAAAGTTTAAACGTATACTCCCTTAATGATTATTTAATATAATTCCTTTTTACTTTTGATACAGTTTCTTTTTAAAATGATTTTGCAGGTACATTTATCCTACTGATCTCTACATATTGAAGATGGTAGAGAAGAAAAGCAAACCATGCGCTTTTCTTGGGGAGAGAGATTGTGGTGTGGAATAAATGTGGTTTGAGACTATGCGATTATCACCATAACACTCGGATTTAAAATCATAATTTCTTTAATTAGCCTGTTTCTAAAAACTGGAAAACCCATTTTTAGAAACCCATTTTTTTTCACCAAAACCCAAAATTTTAATGTGTATATATATGTTAAGTTGTTTATTTGTTTTATGATAGCTTGTATGAAGTTTGTGTGCGCTCATATTCATAATAGTAAAATGGAAGTGGTTAATTAATTAAAAACCACAAGAGAGATCAGAATGAAGTTGATAAACAAAGATTAGGAATTTAGGATCCTGAATCAC

mRNA sequence

ATTCTATTGTCCCATCTCATTTCATAAATTACTTTCATCCTTAAAATTTTTTCTCATCAATCGTTTTAATCTCTCAATGAACATGTCAACAATTTATATCAACAATCTTCTAGTTGGGTTCTCATTCCAAGTAATGGAAAAATGGGAGAATTTCAAAAGCATGAGAATGAGAATCTTCAAATCTCAAAGATGATTTTATTAAATGAAAAGAGAAGCGATCCTGGAGTAAATATGGTTCAAACACGTATCGAAAAAAGGTTGGAGTTAATCGATCAGAAAATCGCCAGAATGAAGAAAGAGCTTAGTAAAATGCCCGTGATCGAAACAAGTTTGAGCGATATCGTGAAGAACCTCGAAATAATAGCACTCAAAGAAGCAGCAGAACCATTCGCATCCCATAACATTACAACAGCCATATCCATATCCGTGTATGAATTCCCATTAACTCCATCTTTCTCCTCACTCCCTCCATTCCTGCAAATCCATATCTCACCTCGAGCAAATCCATGGCATAGGTACATTTATCCTACTGATCTCTACATATTGAAGATGGTAGAGAAGAAAAGCAAACCATGCGCTTTTCTTGGGGAGAGAGATTGTGGTGTGGAATAAATGTGGTTTGAGACTATGCGATTATCACCATAACACTCGGATTTAAAATCATAATTTCTTTAATTAGCCTGTTTCTAAAAACTGGAAAACCCATTTTTAGAAACCCATTTTTTTTCACCAAAACCCAAAATTTTAATGTGTATATATATGTTAAGTTGTTTATTTGTTTTATGATAGCTTGTATGAAGTTTGTGTGCGCTCATATTCATAATAGTAAAATGGAAGTGGTTAATTAATTAAAAACCACAAGAGAGATCAGAATGAAGTTGATAAACAAAGATTAGGAATTTAGGATCCTGAATCAC

Coding sequence (CDS)

ATGGGAGAATTTCAAAAGCATGAGAATGAGAATCTTCAAATCTCAAAGATGATTTTATTAAATGAAAAGAGAAGCGATCCTGGAGTAAATATGGTTCAAACACGTATCGAAAAAAGGTTGGAGTTAATCGATCAGAAAATCGCCAGAATGAAGAAAGAGCTTAGTAAAATGCCCGTGATCGAAACAAGTTTGAGCGATATCGTGAAGAACCTCGAAATAATAGCACTCAAAGAAGCAGCAGAACCATTCGCATCCCATAACATTACAACAGCCATATCCATATCCGTGTATGAATTCCCATTAACTCCATCTTTCTCCTCACTCCCTCCATTCCTGCAAATCCATATCTCACCTCGAGCAAATCCATGGCATAGGTACATTTATCCTACTGATCTCTACATATTGAAGATGGTAGAGAAGAAAAGCAAACCATGCGCTTTTCTTGGGGAGAGAGATTGTGGTGTGGAATAA

Protein sequence

MGEFQKHENENLQISKMILLNEKRSDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALKEAAEPFASHNITTAISISVYEFPLTPSFSSLPPFLQIHISPRANPWHRYIYPTDLYILKMVEKKSKPCAFLGERDCGVE

Homology

[Close]

BLAST of MELO3C030992 vs. NCBI nr
Match: KAA0060080.1 (putative ARM repeat superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-07
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 31   MVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEII 75
            MVQTRIE+RLELIDQ+IA MKKELSKM VIE++LSDI KNLE++
Sbjct: 1179 MVQTRIEERLELIDQEIAGMKKELSKMSVIESNLSDIAKNLELM 1222

[Close]

BLAST of MELO3C030992 vs. NCBI nr
Match: KAA0040203.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK25926.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-07
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 31 MVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALK 78
          MVQTRIE+RLE+IDQ+IA MK+ELSK+PVIE SLS+I KNLE++ L+
Sbjct: 1  MVQTRIEERLEMIDQEIAEMKRELSKVPVIEISLSEISKNLELMRLQ 47

[Close]

BLAST of MELO3C030992 vs. NCBI nr
Match: TYK29892.1 (uncharacterized protein E5676_scaffold208G001470 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-07
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 15  SKMILLNEKRSDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEII 74
           SK I +  ++      MVQTRIE+RLELIDQ+IA MKKELSKM VIE++LSDI KNLE++
Sbjct: 437 SKSITIRSRKP----KMVQTRIEERLELIDQEIAGMKKELSKMSVIESNLSDIAKNLELM 492

[Close]

BLAST of MELO3C030992 vs. NCBI nr
Match: KAA0050449.1 (histone-lysine N-methyltransferase ASHR1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-07
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 25 SDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALK 78
          +D G  MVQT+IE+RLELIDQ+IA MKKE+SKM +IE SL+DIVKNLE++ L+
Sbjct: 17 NDFGGIMVQTQIEERLELIDQEIAGMKKEISKMLLIELSLNDIVKNLEVMRLQ 69

[Close]

BLAST of MELO3C030992 vs. NCBI nr
Match: TYJ97717.1 (histone-lysine N-methyltransferase ASHR1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 20  LNEKRSDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEII 75
           L  +  D G  MVQT IE+RLE +DQ+IA +KKE+SKMPVIE+SLSDIVKNLE++
Sbjct: 73  LRYQNRDSGGIMVQTWIEERLEQMDQEIAGIKKEISKMPVIESSLSDIVKNLELM 127

[Close]

BLAST of MELO3C030992 vs. ExPASy TrEMBL
Match: A0A5A7TAV1 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00200 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 31 MVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALK 78
          MVQTRIE+RLE+IDQ+IA MK+ELSK+PVIE SLS+I KNLE++ L+
Sbjct: 1  MVQTRIEERLEMIDQEIAEMKRELSKVPVIEISLSEISKNLELMRLQ 47

[Close]

BLAST of MELO3C030992 vs. ExPASy TrEMBL
Match: A0A5A7UAD1 (Histone-lysine N-methyltransferase ASHR1 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00560 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 25 SDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALK 78
          +D G  MVQT+IE+RLELIDQ+IA MKKE+SKM +IE SL+DIVKNLE++ L+
Sbjct: 17 NDFGGIMVQTQIEERLELIDQEIAGMKKEISKMLLIELSLNDIVKNLEVMRLQ 69

[Close]

BLAST of MELO3C030992 vs. ExPASy TrEMBL
Match: A0A5D3E1X6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001470 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 15  SKMILLNEKRSDPGVNMVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEII 74
           SK I +  ++      MVQTRIE+RLELIDQ+IA MKKELSKM VIE++LSDI KNLE++
Sbjct: 437 SKSITIRSRKP----KMVQTRIEERLELIDQEIAGMKKELSKMSVIESNLSDIAKNLELM 492

[Close]

BLAST of MELO3C030992 vs. ExPASy TrEMBL
Match: A0A5A7UYA3 (Putative ARM repeat superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00490 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 31   MVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEII 75
            MVQTRIE+RLELIDQ+IA MKKELSKM VIE++LSDI KNLE++
Sbjct: 1179 MVQTRIEERLELIDQEIAGMKKELSKMSVIESNLSDIAKNLELM 1222

[Close]

BLAST of MELO3C030992 vs. ExPASy TrEMBL
Match: A0A5A7SX47 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001840 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-07
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 31 MVQTRIEKRLELIDQKIARMKKELSKMPVIETSLSDIVKNLEIIALK 78
          MVQTRIE+ LELIDQ+IA MKKE++KMPVIE SLS+I KNLE++ L+
Sbjct: 1  MVQTRIEEHLELIDQEIAGMKKEINKMPVIELSLSEIAKNLELMRLQ 47

The following BLAST results are available for this feature:

BLAST of MELO3C030992 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060080.1	8.1e-07	79.55	putative ARM repeat superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0040203.1	8.1e-07	72.34	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK25926.1 t...	[more]
TYK29892.1	8.1e-07	63.33	uncharacterized protein E5676_scaffold208G001470 [Cucumis melo var. makuwa]	[more]
KAA0050449.1	8.1e-07	67.92	histone-lysine N-methyltransferase ASHR1 isoform X3 [Cucumis melo var. makuwa]	[more]
TYJ97717.1	1.1e-06	65.45	histone-lysine N-methyltransferase ASHR1 isoform X3 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030992 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAV1	3.9e-07	72.34	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UAD1	3.9e-07	67.92	Histone-lysine N-methyltransferase ASHR1 isoform X3 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3E1X6	3.9e-07	63.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UYA3	3.9e-07	79.55	Putative ARM repeat superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SX47	5.1e-07	72.34	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of MELO3C030992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030992.1	MELO3C030992.1	mRNA